Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00557 ATGAATGACCTATTCTCAAACTCATTCAAGAAATACAGCAACCTGAAGCAGCAGGCACACCTCGATGACGTAGAGGCCGGGAAAGAAACCGTGAACCTCGACAAATTCTTCGAGGACGTGGAGAACGTGAAAGAAGAAATGAGAACGGTCGAGAAGCTACACAGAAAACTGCAGGAGGCGAACGAAGAGAGTAAAGTGGTGCACAATGCAAAAACAATGAAGGAGCTCCGGGCGAGGATGGACAAGGACGTGGAGCAGGTCCTTAAGCGCGTGAAAGTAATCAAGGGGAAATTAGAGGCCTTGGAGCGTTCCAACGCCGCCAACAGAAACATCCCTGGCTGCGGTCCGGGTTCCTCGGCGGACAGAACCAGAACCTCGGTTGTTAGTGGATTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAAGGTCTGAGAACAAGGTTGATGCAGATGGAGTACAAGGAGACCGTGGAGCGAAGATATTTTACGATAACCGGAGAGAAGCCCGATAAGGAGACTATAGAGAACTTGATATGGAGTGGGGAGAGTGAGAGTTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAAGGGACAAATAATGGACACAATTTCGGAGATTCAGGAGCGGCACGACGCGGTGAAGGAGATTGAAAAGAATTTGATTGAGTTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGTCGCAGGGGCAGCAGCTAAATAATATAGAGAGCCACGTGGCGCATGCGAGTTCCTTCGTGAGACGCGGCACGGATCAGCTTCAGGATGCTAGAGAGTATCAGAAGAGTTCGAGGAAGTGGACGTGCTATGCAATCATTCTTGGCCTTGTGCTTCTTCTTGTGCTCTTGTTTCCAATCTTGATTAACCTTTTGCCTCATTTGTTAAGGGTGCATGAGATGGAATCCTACCTTCCTGAACCACACTGTTCCTAG 960 0.4969 MNDLFSNSFKKYSNLKQQAHLDDVEAGKETVNLDKFFEDVENVKEEMRTVEKLHRKLQEANEESKVVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRTRLMQMEYKETVERRYFTITGEKPDKETIENLIWSGESESFLQRAIQEQGKGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQDAREYQKSSRKWTCYAIILGLVLLLVLLFPILINLLPHLLRVHEMESYLPEPHCS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00557 319 Pfam SNARE domain 241 292 IPR000727 -
Gma08g00557 319 Gene3D - 30 163 - -
Gma08g00557 319 SMART SynN_4 28 155 IPR006011 GO:0016020
Gma08g00557 319 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Gma08g00557 319 PANTHER SYNTAXIN 10 297 IPR045242 -
Gma08g00557 319 PANTHER T-SNARE-RELATED 10 297 - -
Gma08g00557 319 Coils Coil 84 104 - -
Gma08g00557 319 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma08g00557 319 SMART tSNARE_6 199 266 IPR000727 -
Gma08g00557 319 Pfam Syntaxin 35 239 IPR006011 GO:0016020
Gma08g00557 319 Gene3D - 194 298 - -
Gma08g00557 319 CDD SynN 33 191 IPR006011 GO:0016020
Gma08g00557 319 Coils Coil 33 70 - -
Gma08g00557 319 CDD SNARE_syntaxin1-like 203 264 - -
Gma08g00557 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00557 Gma-Chr8 4560702 4561845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00557 1 304 SNARE and Associated Proteins AT1G61290 77.961 1.27e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00557 K08486 - gmx:100805869 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00557 08 4560702 4561845 Gma15g00642 15 5267503 5268417 PCT
Gma08g00557 08 4560702 4561845 Gma13g02189 13 36894526 36895440 PCT
Gma15g00642 15 5267503 5268417 Gma08g00557 08 4560702 4561845 PCT
Gma13g02189 13 36894526 36895440 Gma08g00557 08 4560702 4561845 PCT