Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00551 ATGAACGGGAAAGCCTCCATCTCCAAGGAGCTCAATGCCAAGCACGCCAAGATATTAGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGCGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTAATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGAAAAAATTCCACCAAATTTTGATAGAAGTAAATTGGGAATTGAGAAGTTTATCCGTGACAAGTATGTGGAGAAAAGATGGGCTTCAAAAGAAGAACTGCAATCAACTTCAAGGACAGGTGAAATAATCTATAATTTTGATGAGTCACCAAATGGAGGGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGTATTCTTGCTAACCACGTGGCACAAATTCTACCTCCAATAACAAGATCTCGTGGGGGTTTTACTTTTATAGACACGCAAAAGAAGAATTCACCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAAACTTCTCAACCATGCCTCCTTCAAGTTGGGCAACATTTGATTGAGATGTGCCAGCGTTTTAAGTTTATAGCTTGTTCAACTAATCCTTGGTGTAGAAGTCACAAGATTATAGTTACAGATGACGCTGTGAAGTGGCATGAGCATTGA 780 0.4103 MNGKASISKELNAKHAKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNEKSNKHWEEKIPPNFDRSKLGIEKFIRDKYVEKRWASKEELQSTSRTGEIIYNFDESPNGGARSGILKNNRRLSLEESILANHVAQILPPITRSRGGFTFIDTQKKNSPPLKRPSSSVDFDKTSQPCLLQVGQHLIEMCQRFKFIACSTNPWCRSHKIIVTDDAVKWHEH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00551 259 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Gma08g00551 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 214 IPR044520 GO:0005096
Gma08g00551 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 214 - -
Gma08g00551 259 CDD ArfGap 19 119 - -
Gma08g00551 259 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Gma08g00551 259 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Gma08g00551 259 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gma08g00551 259 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gma08g00551 259 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gma08g00551 259 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Gma08g00551 259 SMART arf_gap_3 16 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00551 Gma-Chr8 4520116 4526808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00551 22 137 C2H2 Transcription Factor Family AT4G05330 45.082 3.52e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00551 K12486 - gmx:100803735 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00551 08 4520116 4526808 Gma16g01737 16 38482705 38487237 PCT
Gma08g00551 08 4520116 4526808 Gma09g01560 09 40704473 40707574 PCT
Gma16g01737 16 38482705 38487237 Gma08g00551 08 4520116 4526808 PCT
Gma09g01560 09 40704473 40707574 Gma08g00551 08 4520116 4526808 PCT