Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00548 ATGGAGTACGGTAGCGGAGGCGGTGGGTCACAGTCCCCAGGGGAGCAAGATGGCTCAGATTCCCAAGAGAGGAGGAAGCGCTATCATCGTCATACTGCCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCGGATGAGAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAGATCAAGTTCTGGTTCCAAAATAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAGAATGTTATCTGCCCTTCTTGTGGTGCCCCACCTCTCAATGACGATTGTTATTTTGATGACCAAAAGTTGCGATTAGAGAACGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTATGGAAACCAAGGGATGGTTGGTCCTGCTCCTTCTTCCCTTAATCTTGATCTTCTTCCTGCTGCAGGGACTTCCTCATCATCCATGCCTTATCATCCCCCTTGCCTTTCGGACATGGACAAGTCCCTCATGTCAGACATTGCTTCCAATGCCATGGAAGAATTTCTAAGGCTCGTGCAGACAAACGAACCCTTGTGGCTTAAATCAAACGTCGATGCTAGAGATGTTCTTAGTTGTGATGCCTACGAAAGAATGTTCCACAAGCCCAATACTCGCCCCAAGAATCCTAACGTTCGCATTGAAGCATCCCGAGATTCTGGAGTTGTATTAATGAATACTTTAGCTTTGGTTGATATGTTTATGGACCCAAACAAGTGGATACAACTTTTTCCCACTATTGTCTCTGTGGCAAGGACTATTCAAGTCATATCTTCTGGGATGATGGGCAGTTGCAGTGGTTCTTTACAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGAACATGGGCAGTAATGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTATGCTCCTCAATTTCGGTCTCATCGTTGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAGACTCTTCCTCACCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTACTACCCTCCAGAGGATGTGTGAAAGACTTACTTATCTGATGGCTACAAGCAATCCTACCCGGGATAATCTAGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATGGACCACGCTCTCTGGATTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACTATTTGGCTCCCCACCCCTCCTCACGCTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAGCTTTCAACAACAGTACTCAGAACATGTTAATACTACAAGAAAGCTGCATAGATTCCTATGGTTCATTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACTTAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGTCAGCCTGACCAGGAAGGAGATGATGGAGCATCAACCAGCTCTAACAACGCAAACAGGAATATAGTAAGGTCTGGTGGTTCACTAGTTACAATTGCATTCCAAATTCTTGTGAGCAGCTTGCCATCTGCTAAACTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTGTCCAGCAAATAAAGTCTTCCTTAAGTTGTCCTACCCTACCTAGCTAG 2166 0.4534 MEYGSGGGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGAPPLNDDCYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASYGNQGMVGPAPSSLNLDLLPAAGTSSSSMPYHPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNVDARDVLSCDAYERMFHKPNTRPKNPNVRIEASRDSGVVLMNTLALVDMFMDPNKWIQLFPTIVSVARTIQVISSGMMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVMDVSYDFPQDSHYAPQFRSHRCPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLTTLQRMCERLTYLMATSNPTRDNLGGVISSPEGKRSMMKLAQRMVTNFCANISTSSGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHAVFNFFKDENKRPQWDVLSNGNAVQEVANIANGLHPGNSISVLRAFNNSTQNMLILQESCIDSYGSFVVYCPVDLPSINLAMSGEDPSYIPLLPNGFTILPDGQPDQEGDDGASTSSNNANRNIVRSGGSLVTIAFQILVSSLPSAKLNMESVTTVNNLIGSTVQQIKSSLSCPTLPS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00548 721 SMART HOX_1 23 86 IPR001356 GO:0003677
Gma08g00548 721 MobiDBLite consensus disorder prediction 1 30 - -
Gma08g00548 721 Pfam START domain 226 450 IPR002913 GO:0008289
Gma08g00548 721 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gma08g00548 721 CDD homeodomain 24 83 IPR001356 GO:0003677
Gma08g00548 721 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Gma08g00548 721 MobiDBLite consensus disorder prediction 643 664 - -
Gma08g00548 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 716 IPR042160 -
Gma08g00548 721 CDD START_ArGLABRA2_like 220 449 - -
Gma08g00548 721 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gma08g00548 721 Gene3D - 224 450 IPR023393 -
Gma08g00548 721 SUPERFAMILY Bet v1-like 471 711 - -
Gma08g00548 721 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Gma08g00548 721 Gene3D - 11 95 - -
Gma08g00548 721 SMART START_1 225 450 IPR002913 GO:0008289
Gma08g00548 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 716 - -
Gma08g00548 721 SUPERFAMILY Bet v1-like 217 451 - -
Gma08g00548 721 Pfam Homeodomain 25 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00548 Gma-Chr8 4502389 4505890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00548 20 718 Homeobox Transcription Factor Family AT1G73360 63.210 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma08g00548 START 2.9e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00548 K09338 - gmx:100796808 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02410 05 44875319 44878198 Gma08g00548 08 4502389 4505890 GST
Gma08g00548 08 4502389 4505890 Gma16g01753 16 38694601 38698098 PCT
Gma08g00548 08 4502389 4505890 Gma09g01579 09 40993985 40997390 PCT
Gma16g01753 16 38694601 38698098 Gma08g00548 08 4502389 4505890 PCT
Gma09g01579 09 40993985 40997390 Gma08g00548 08 4502389 4505890 PCT