Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00546 ATGGCGGACACAAATACAAACTCAGTTGACGTGATTTTGGACTTTCTTAGGAGGAACCGATTCACCAGAGCTGAGGCTGCTTTGCTCAGTGAGATCAGTAATCGTCCGGACTTGAATGCCTTCCTTCAGAAGCCTCAAGGTCAAGGTCAAGAACTCATTGTCAAGGAAATTGAGTGTGGAACCAAATGGAAAACAACTTCGGAGGATTTATACTCCTGGAAGTTCAACCCCACCAATGGTCCTGTCAAGGCCACTGTATCCAAATGTCAAACTGTTGATGTAATTGCAGCCAATACCAATTCAAAGTCTGGGTCAGGGGAGGAAAATGCTGACAAAAAATCCACGTGGCCTGCAAGTAGTAGTAAAGCCTCTGTTGTGCAAAGCAAAGAACCTAGGGAACTTGATCGCCAACTTAAATTCAATAGTTCATCTCTTGAAGTGAACTTCACAGATAATCCCTGCCCAAGAAAGGATGAGAATGTGAATTCGTCTTCAGACTCCAGCAAAGATTGTTCTGTCAAGACTGTCTTCCCCTTCTCAAAAGGGGACGTGTCTACAAGCTTTGATGGTGCCACTTATTCTTACAAAATAGAGGAGAAAAAAAAGGTAGAAATTAGTGATACTAGGACATCTATTGAAGAGCAGGTGGGTGAATTGGGGAGGCCTATTTACTTGGTCAAGACACCAGGCAGTTCTGAACAGAAGATGATAGGAAGCTTAAGTTTTCCTCTCCCCCCTGAAAATCTGAAGGAAGAGATTCCTAGGCTTCCTCCGGTTAAACTCAAGTCAGATGACAAGCCCTTGGTTGTTAATTGGGAGGAGAAGTTTGAGCGAGATGGACCAACCTCAAAACTCCCTGGTGCTGATAGCACTTTGCTTGTTGGTTCATATCTGGATGTACCTATTGGACAGGAAATTAACCCTTCAGGTATGAGGAAGGCTACAGGGGGCTGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGATACATCTGATCTTGTATCAGGATTTGCTACAGTTGGTGATGAGTTGAGTGAATCTATTGATTATCCGAATGAATATTGGGACTCCGATGAATATGATGATGATGAGGATGTTGGGTACATGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCGCATGAAATTGATTACCCTAGTGACAATGAAAAGGGGACTGGACATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGATGACGATCAATCCTTTGCTGAGGAGGATTCTTACTTTTCCGGGGAGCGATATCTTCAGGAAAATAATGTTGAACCTGTCACAGCTACTGATGATCCTATTGGTCTAACACACACTGAGTATGGAAGGACTAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTAATGTGTGCAGAACCGGTCTGGCGGGGCTTTGTCCCTCAGACAAATGAACTCATCATGCTAGGAGATGGGAGGGTTTTGAATGATAATGTAAGATCACGGCTAGAGGACATCAGTATGGATGATGATCAACATGGTTCAGTTAGGTCAATTGGGGTAGGGATCAACAGTGATGCTGCAGATATTGGTAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCGTGATCGTGATGCAGGACTTGGTGGTTCTAGGCACTCTCATCATGATTTTGATAAGAAATCTACTAACAAATCAAACAAAAATAAGAACTACGAAAAGAGTGAATCAAATAAATATGTCATAGGATGTGATAAAGATGCACCGTTGCAGATGAAAACTCATGGTGATGGAAACTTCTCATTTCCCCTATCTTTGAAGGATGGCCAGATGATTCAGGCTTCCACCAATAAGTCCCTGTGGTCAAATAACGGCAACACAGATGAAGCTGATGACTGTCTTCATGCATTTGTGGGAACTGATGACATGCTTGCTTTGTGGAGGCGAAAGAGCAGTGATTCTTCACCTGTTAAAAGTTATGAGAATAATGCCGACATTGTAAGATCCACAAACTCTTCTCCAACAACAGTCTCAAATTATGGGTATTCTGAAAGAGAGCATGTGAAAGTAGAAGAAGATGAAAAGACTGGAATTGCAAGGGAAGATGATCTTGGAGCATCGCTAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGGAGGTATCATGTTACTGAGTATTTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATACGATTATTTCTATTATCGAGAGCATTTGTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATAGTAGGTGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAAACAGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGGGTGATTGGGATCATTGGTCCAATTGATCAAAATATGCTTGCAAAAGGACGGGACACATATAAGTACTTCACCAAAAATCACATGCTTTATGAAAGGAATCAGGAAACCAACCGGTTAGAATACTTGATTCCGAAAAAGACATCCCTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCACTTGCTTGAAGTCAACCCTAAGAAGCGGCCCTCTGCATCTGAGGCCCTGAAGCATCCATGGTTGTCATACCCATATGAACCAATATCATCTTGA 3291 0.416 MADTNTNSVDVILDFLRRNRFTRAEAALLSEISNRPDLNAFLQKPQGQGQELIVKEIECGTKWKTTSEDLYSWKFNPTNGPVKATVSKCQTVDVIAANTNSKSGSGEENADKKSTWPASSSKASVVQSKEPRELDRQLKFNSSSLEVNFTDNPCPRKDENVNSSSDSSKDCSVKTVFPFSKGDVSTSFDGATYSYKIEEKKKVEISDTRTSIEEQVGELGRPIYLVKTPGSSEQKMIGSLSFPLPPENLKEEIPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKLPGADSTLLVGSYLDVPIGQEINPSGMRKATGGCWLSVSQGIAEDTSDLVSGFATVGDELSESIDYPNEYWDSDEYDDDEDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEDDDQSFAEEDSYFSGERYLQENNVEPVTATDDPIGLTHTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLEDISMDDDQHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDLEYFRDRDAGLGGSRHSHHDFDKKSTNKSNKNKNYEKSESNKYVIGCDKDAPLQMKTHGDGNFSFPLSLKDGQMIQASTNKSLWSNNGNTDEADDCLHAFVGTDDMLALWRRKSSDSSPVKSYENNADIVRSTNSSPTTVSNYGYSEREHVKVEEDEKTGIAREDDLGASLEDEEVAAVQEQVRQIKAQEEEFETFNLKIVHRKNRHVFNVTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQNMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00546 1096 MobiDBLite consensus disorder prediction 386 419 - -
Gma08g00546 1096 Gene3D Transferase(Phosphotransferase) domain 1 839 1087 - -
Gma08g00546 1096 Coils Coil 732 752 - -
Gma08g00546 1096 CDD PKc_DYRK_like 785 1087 - -
Gma08g00546 1096 Gene3D Phosphorylase Kinase; domain 1 779 866 - -
Gma08g00546 1096 MobiDBLite consensus disorder prediction 557 591 - -
Gma08g00546 1096 PANTHER DUAL SPECIFICITY PROTEIN KINASE 201 1094 - -
Gma08g00546 1096 SUPERFAMILY Protein kinase-like (PK-like) 774 1089 IPR011009 -
Gma08g00546 1096 PANTHER - 201 1094 - -
Gma08g00546 1096 MobiDBLite consensus disorder prediction 99 137 - -
Gma08g00546 1096 Pfam Protein kinase domain 785 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00546 1096 MobiDBLite consensus disorder prediction 99 127 - -
Gma08g00546 1096 SMART serkin_6 785 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00546 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 911 923 IPR008271 GO:0004672|GO:0006468
Gma08g00546 1096 ProSiteProfiles Protein kinase domain profile. 785 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00546 1096 MobiDBLite consensus disorder prediction 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00546 Gma-Chr8 4467153 4478312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00546 784 1082 MAP Kinase Gene Family AT5G19010 30.094 9.89e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gma08g00546 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00546 - - gmx:100802148 2034.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00546 08 4467153 4478312 Gma08g00546 08 4467153 4478312 ECH
Gma05g02407 05 44836294 44847628 Gma08g00546 08 4467153 4478312 GST
Gma08g00546 08 4467153 4478312 Gma16g01765 16 38839750 38846917 PCT
Gma08g00546 08 4467153 4478312 Gma09g01592 09 41170356 41179134 PCT
Gma16g01765 16 38839750 38846917 Gma08g00546 08 4467153 4478312 PCT
Gma09g01592 09 41170356 41179134 Gma08g00546 08 4467153 4478312 PCT