Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00543 ATGATCGACATGTTAGTGATCCATAACTCATTACCTCCCACTTCTGAGGCCGAGAATGGTACTGCTGCTACTGCCACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTAGTGTCCCTCTCACCCAAAACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTTCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCATGGAAGCTGTTGAAGAGGGAAACTACAGCGGTGGTGAAGAAGCGAGTGTTTGTATGCCCGGAGCCTAGTTGTTTGCACCATGACCCATGCCATGCTCTGGGTGATCTTGTCGGCATAAAGAAGCATTTCAGAAGGAAACACAACAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCCGAGGACACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGACGCGTGCAACGTAGGGAGGCTGGGGCCAGAAACACAATCACAGGCACAGGCAGTGCAAGCAGCTGCATGCTTGTCTCGAACAGCTTCAAGCGAAACCAATTTCAGCACTGGTTCCCCTTGGCCACAAAGCGGTACTATAATAATTCCAAATCCCACCGTTACGGTAGTAGAACCCTCCTCATACACCATTGTCACTGCCGAAACCAACAACAAAGTCCACCCCAACCTGGAGCTTCAGCTCTCTAATACCACTCCTACTGCATCATCACAGGAAGAAAGGGTTCATCAAGAGCAGTTGAGGATTGCGAAGGCGAAGAAAGCGTTGGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAAATCGAACTGGCCGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAAGAAGCGCTTGCGGAACTTGACAAAGCCTATGCCTTCAAGGACCATGCAATCAAACACATCAATTCAATCATGCTTCAAATCACTTGCCGAGCTTGCAAGCACCATTTTCATTCGCCAACCGACGACCAAATCTTCTCCTACATAACACAAGCTCGCCAAGTACAAAAACATCGTCTCAAACCCATTATTAATTAA 1143 0.4899 MIDMLVIHNSLPPTSEAENGTAATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTAVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHNNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQSQAQAVQAAACLSRTASSETNFSTGSPWPQSGTIIIPNPTVTVVEPSSYTIVTAETNNKVHPNLELQLSNTTPTASSQEERVHQEQLRIAKAKKALAEEARKQAKRQIELAELEFTNAKRIRQEALAELDKAYAFKDHAIKHINSIMLQITCRACKHHFHSPTDDQIFSYITQARQVQKHRLKPIIN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00543 380 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gma08g00543 380 Gene3D Classic Zinc Finger 35 99 - -
Gma08g00543 380 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gma08g00543 380 PANTHER OS03G0310200 PROTEIN 269 358 IPR039288 GO:0009630
Gma08g00543 380 PANTHER OS03G0310200 PROTEIN 13 273 IPR039288 GO:0009630
Gma08g00543 380 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Gma08g00543 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gma08g00543 380 SMART c2h2final6 99 129 IPR013087 -
Gma08g00543 380 SMART c2h2final6 57 79 IPR013087 -
Gma08g00543 380 SMART c2h2final6 135 162 IPR013087 -
Gma08g00543 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 273 - -
Gma08g00543 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 269 358 - -
Gma08g00543 380 MobiDBLite consensus disorder prediction 12 26 - -
Gma08g00543 380 Coils Coil 268 321 - -
Gma08g00543 380 Gene3D Classic Zinc Finger 120 201 - -
Gma08g00543 380 MobiDBLite consensus disorder prediction 8 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00543 Gma-Chr8 4442994 4444840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00543 18 367 C2H2 Transcription Factor Family AT2G01940 54.479 4.18e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g00543 zf-C2H2 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00543 K25871 - gmx:100795754 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00543 08 4442994 4444840 Gma08g00543 08 4442994 4444840 ECH
Gma05g02405 05 44815939 44817448 Gma08g00543 08 4442994 4444840 GST
Gma08g00543 08 4442994 4444840 Gma07g00975 07 10816309 10819730 PCT
Gma08g00543 08 4442994 4444840 Gma09g01597 09 41260331 41263406 PCT
Gma07g00975 07 10816309 10819730 Gma08g00543 08 4442994 4444840 PCT
Gma09g01597 09 41260331 41263406 Gma08g00543 08 4442994 4444840 PCT