Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00542 ATGGAAGGAGGATCGGGTGGTGGCGAGAGAGAGAAGTGGAACAGTGTAAGTGTATACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGAAGCTACGCCACGGACGGGTGCGGCGAGTTCACGGTGGACGGCGCGGGGGGACTACAATGCGCGGCGTGCGGCTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCCGGTGGCGGAGcatgaggagtatggaggcaagaagcggttcaggtccaagttcacggcagatcagaaggagaagatgctggggtttgcggagaagcttggttggaagcttcagaggaaggatctgaatgatgagatagagaggttttgccggagcgttggggttagtaggcaagtcttcaaagtttggatgcataaccataagaacTCTTCCTCCTCCTCCTCCTCTACCCCCGCCAATGTCTCCTCCCTCACCCAGTAA 459 0.3529 MEGGSGGGEREKWNSVSVYRECLRNHAASLGSYATDGCGEFTVDGAGGLQCAACGCHRNFHRKVKYPVAEHEEYGGKKRFRSKFTADQKEKMLGFAEKLGWKLQRKDLNDEIERFCRSVGVSRQVFKVWMHNHKNSSSSSSSTPANVSSLTQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00542 152 MobiDBLite consensus disorder prediction 133 152 - -
Gma08g00542 152 Pfam ZF-HD protein dimerisation region 18 64 IPR006456 -
Gma08g00542 152 Gene3D - 67 141 - -
Gma08g00542 152 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 63 IPR006456 -
Gma08g00542 152 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 77 135 IPR006455 -
Gma08g00542 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 17 143 - -
Gma08g00542 152 SUPERFAMILY Homeodomain-like 71 135 IPR009057 -
Gma08g00542 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 143 - -
Gma08g00542 152 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 64 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00542 Gma-Chr8 4432820 4433278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00542 19 136 ZF-HD Transcription Factor Family AT4G24660 42.857 2.48e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma08g00542 ZF-HD_dimer 3.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00542 - - gmx:100801620 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02404 05 44804027 44804485 Gma08g00542 08 4432820 4433278 GST
Gma08g00542 08 4432820 4433278 Gma07g00972 07 10778504 10779034 PCT
Gma08g00542 08 4432820 4433278 Gma09g01600 09 41303976 41304707 PCT
Gma07g00972 07 10778504 10779034 Gma08g00542 08 4432820 4433278 PCT
Gma09g01600 09 41303976 41304707 Gma08g00542 08 4432820 4433278 PCT