Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00534 ATGCTGCCTCAGAAGCACACTCTGGTGGCGACACTGGCTGTGGTGCTCGCAGTAGCACAAGCAGTAGATCTGGCTTCCGAGCGAGCCGCATTGCTCGCTCTCCGTTCCGCCGTGGGAGGCCGAACCCTCTTCTGGAACGCCACCAGGGAGAGCCCCTGCAATTGGGCCGGGGTCCAATGCGAGCACGACCACGTCGTCGAGCTTCACCTCCCCGGTGTCGCTCTCTCCGGCGAAATCCCGGTCGGTATATTCGGGAATCTGACCCAGCTCCGAACCCTTAGTCTCCGTTTCAACGCACTCCGAGGTTCCCTCCCTTCAGATCTGGCCTCCTGCGTCAACCTCCGCAACCTCTACATTCAGCGCAACTTGCTCAGCGGCCAAATCCCACCCTTTCTGTTTGATTTTGCGGACCTGGTTCGCTTGAACTTGGGCTTCAACAACTTCTCCGGGCCCTTTCCCACCGCCTTCAACAGCCTCACCCGCTTGAAAACTTTGTTTCTCGAAAACAACCAGCTCTCCGGCCCAATCCCCGACCTGGACAAACTCACCCTCGACCAGTTCAACGTCTCCGACAACCTCCTCAACGGCTCTGTCCCTCTTAAGCTTCAGGCATTCCCTCCGGACTCTTTTCTAGGTAACTCCCTCTGTGGCCGCCCACTCTCTCTCTGTCCCGGAGATGTTGCCGATCCTCTCTCCGTCGACAACAACGCCAAGGACAGCAACACCAACAACAAGAGCAAGTTGTCCGGGGGCGCCATAGCGGGAATTGTTGTCGGATCGGTGGTGTTTCTTCTCTTGCTTGTGTTCCTCTTCATTTTCCTGTGCAGGAACAAGAGTGCCAAGAATACCAGCGCCGTCGACATTGCCACTGTCAAACATCCTGAGACGGAGTCCAAAGTTCTTGCCGACAAGGGGGTCTCCGATGTCGAGAACGGCGCTGGTCATGCTAATGGCAACTCTGCGGTCGCAGCTGTGGCGGTGGGGAATGGCGGTAGCAAGGCGGCGGAAGGGAACGCGAAGAAGTTGGTGTTTTTTGGGAATGCGGCGAGGGCGTTTGATTTGGAAGATTTGCTTAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTACAAGGCGGTGTTGGAGGCGGGGCCGGTGGTGGCCGTGAAGAGGTTGAAGGACGTGACCATTTCGGAGAAGGAATTTAGGGAGAAGATTGAGGCGGTGGGAGCGATGGATCACGAGAGTTTGGTGCCTCTCAGGGCTTACTATTTCAGCAGGGATGAGAAGCTCCTCGTCTATGATTACATGTCCATGGGAAGCTTGTCTGCGCTTTTACATGGAAACAAAGGAGCTGGTAGGACACCACTGAATTGGGAAGTGAGATCAGGCATTGCACTTGGAGCTGCCCGTGGCATTGAGTACCTACATTCACGAGGGCCTAATGTTTCTCATGGAAATATCAAGTCATCAAACATCCTCTTAACCAAATCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTTGTTAGCCCCTCCTCTACCCCTAACCGTGTGGCCGGCTACCGTGCACCGGAGGTGACTGATCCTCGCAAGGTGTCTCAGAAGGTAGATGTGTACAGTTTTGGTGTGTTGCTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTGGACCTCCCCAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTAGATTGTGCAGCACAATACCCTGACATGCGCCCTTCAATGTCTGAAGTGGTAAGGCGCATACAAGAGTTGCGAAGGTCTAGCTTGAAAGAGGAGGACCAGGACCAAATCCAACATGACAATGATATACAGTTATAG 1950 0.5421 MLPQKHTLVATLAVVLAVAQAVDLASERAALLALRSAVGGRTLFWNATRESPCNWAGVQCEHDHVVELHLPGVALSGEIPVGIFGNLTQLRTLSLRFNALRGSLPSDLASCVNLRNLYIQRNLLSGQIPPFLFDFADLVRLNLGFNNFSGPFPTAFNSLTRLKTLFLENNQLSGPIPDLDKLTLDQFNVSDNLLNGSVPLKLQAFPPDSFLGNSLCGRPLSLCPGDVADPLSVDNNAKDSNTNNKSKLSGGAIAGIVVGSVVFLLLLVFLFIFLCRNKSAKNTSAVDIATVKHPETESKVLADKGVSDVENGAGHANGNSAVAAVAVGNGGSKAAEGNAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFREKIEAVGAMDHESLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVSPSSTPNRVAGYRAPEVTDPRKVSQKVDVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDMRPSMSEVVRRIQELRRSSLKEEDQDQIQHDNDIQL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00534 649 SUPERFAMILY Protein kinase-like (PK-like) 363 631 IPR011009 -
Gma08g00534 649 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Gma08g00534 649 Gene3D Ribonuclease Inhibitor 137 223 IPR032675 -
Gma08g00534 649 SUPERFAMILY L domain-like 45 201 - -
Gma08g00534 649 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Gma08g00534 649 ProSiteProfiles Protein kinase domain profile. 359 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00534 649 Gene3D Transferase(Phosphotransferase) domain 1 434 648 - -
Gma08g00534 649 CDD STKc_IRAK 365 628 - -
Gma08g00534 649 Gene3D Phosphorylase Kinase; domain 1 327 433 - -
Gma08g00534 649 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Gma08g00534 649 Pfam Protein kinase domain 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00534 649 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Gma08g00534 649 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 645 - -
Gma08g00534 649 PANTHER OS05G0588300 PROTEIN 6 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00534 Gma-Chr8 4371761 4374541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00534 23 629 Receptor kinase-like Gene Family AT1G48480 65.323 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma08g00534 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00534 - - gmx:100788892 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00534 08 4371761 4374541 Gma08g00534 08 4371761 4374541 ECH
Gma05g02395 05 44747677 44749986 Gma08g00534 08 4371761 4374541 GST
Gma08g00534 08 4371761 4374541 Gma07g00930 07 10246447 10248975 PCT
Gma08g00534 08 4371761 4374541 Gma09g01625 09 41604198 41606719 PCT
Gma07g00930 07 10246447 10248975 Gma08g00534 08 4371761 4374541 PCT
Gma09g01625 09 41604198 41606719 Gma08g00534 08 4371761 4374541 PCT