Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00519 ATGGAGACCAAAGAGGAGATAATGCTTCCATCACCGTCCAAAGGCCTTGCTAATAATGGCGAACAGTGTTCTCCGGGTGATGACTCCGGGAGCTTCTATATGAAACTCGCTGTGTTGTTGGAGTCCTCTGGACTCAGTCTCATCTTCAATGTCCGAGAAACATTGCTGGACTTGTACCTATTTTACTTGGAGGTGACTAGAAGAGAAGGATATCACCAGGTTGATCGAGAAAAGAAATGGGGTGAAGTAGTATTTGCCCTGAAATTGGAAGGGAATAGTGTAAAGTTATGTGCTCAAGCTGAAAAGTTTTACGCACATCTTCTCTACCAATTTGAGCAATTGTACTTCTACAGGCGTCCTGCAAAGCAAGCTGGATCTAACAGCACCAAAGGTCCACTTCAGAAGAAGCGGAAATCAACAGCTAGTTTACCTCATACAATGGATATTAAAGATGGTCATAAGAAGACCACAGAGATGTCCAAGGACTACTCTTGCAACATGACAGCAGTGGTCTTTAGAGGTGCTTATACAATGCTTTGGATTCCAACCAAGCAGGTGCTGGGTATGTGGTTTTACCGCCACCCTCACATGTCAAAGAAACCAAGAAACACCGAGGCCTTAGAAGGCCAGAAAATCCTACGTTTGGCTATCGATGCATGGAGGAATATGTCTACAATTGAGAAAAAGCCATATGAGGAGGAAAGCAAGAAGAACAAGGAAGCAATGATTGGTAACAAGAAGGAGGAGAAGTGGCATAGTCTGAGTGGTGATAATCTTGTAACTTCACAACCTGAGACAGATGACTCCAAGCTTGTCAAGAAAGCAACTGAAAAATCGCCAACGGATCCTTCCTTCATCTTCATATATAATTGA 873 0.433 METKEEIMLPSPSKGLANNGEQCSPGDDSGSFYMKLAVLLESSGLSLIFNVRETLLDLYLFYLEVTRREGYHQVDREKKWGEVVFALKLEGNSVKLCAQAEKFYAHLLYQFEQLYFYRRPAKQAGSNSTKGPLQKKRKSTASLPHTMDIKDGHKKTTEMSKDYSCNMTAVVFRGAYTMLWIPTKQVLGMWFYRHPHMSKKPRNTEALEGQKILRLAIDAWRNMSTIEKKPYEEESKKNKEAMIGNKKEEKWHSLSGDNLVTSQPETDDSKLVKKATEKSPTDPSFIFIYN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00519 290 Gene3D - 17 137 IPR036431 GO:0003677
Gma08g00519 290 MobiDBLite consensus disorder prediction 231 290 - -
Gma08g00519 290 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 203 275 - -
Gma08g00519 290 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 15 171 - -
Gma08g00519 290 SMART bright_3 27 117 IPR001606 GO:0003677
Gma08g00519 290 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g00519 290 Gene3D High mobility group box domain 189 241 IPR036910 -
Gma08g00519 290 SUPERFAMILY ARID-like 31 119 IPR036431 GO:0003677
Gma08g00519 290 Pfam ARID/BRIGHT DNA binding domain 31 112 IPR001606 GO:0003677
Gma08g00519 290 MobiDBLite consensus disorder prediction 123 150 - -
Gma08g00519 290 MobiDBLite consensus disorder prediction 231 254 - -
Gma08g00519 290 ProSiteProfiles ARID domain profile. 26 116 IPR001606 GO:0003677
Gma08g00519 290 SMART ARID_2 23 112 - -
Gma08g00519 290 MobiDBLite consensus disorder prediction 123 140 - -
Gma08g00519 290 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 171 - -
Gma08g00519 290 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 203 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00519 Gma-Chr8 4268416 4270215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00519 56 133 ARID Transcription Factor Family AT1G76110 34.615 1.09e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma08g00519 ARID 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00519 - - pvu:PHAVU_007G202100g 291.582