Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00506 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACAGTGGGTGAAGCTTCTGGTCAAGCAGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCGTTGTGAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAAAGGGTCCCCAATCTTTACATCAAGGCTCTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAAGAGGAGAGCGATGAAGAGTATGACAGTGATGGTGAGATTATTGATCCGGATCAGCTTCAAAAACCCGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGATGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATATGCCCATCAATGTATGGAAAAAATGTGTACAGAACATGCTGATCATTCTTGATATTTTGGTGCAGTACCCAAACATAATGGTTGATGATTCCGTGGAACCGGATGAGAATGAAACTCAGAAAGGTGCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACGCGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCCCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTTGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCCCAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGGATTCCTACTGCATTTGTAGTTACCCCAGAGGTTGTTACACGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATATATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCATCATGCTCTTCTTGATGAGTTTTCAATAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGACAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTTTCACAAAGTCGTTATCATGAGAAGACTCCTGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCGTATCATATGCACATCAATCTAGAGCTCCTAGAGGCAGTACATCTCGTATCTGCTATGCTGCTGGAAGTGCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGATTCTTCGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACGGTACTTGAAATGCTAAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTTTCTTCATCTTATGAATCGTTGAGCCTGGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCGCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTCGAACACTCCAGGCTGCAGGCATTGGTATTCCAATTGACAGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAACAGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCCGCCGCTGCTGCCGGCAGTGGAACAGCCTCTACAGGTGGTAGGTGGCAAGACCTGTCCCCTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGACCAATGACATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGAGGTTCGTATGGAGGTTCAGGGAGGACTTCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGGACCTGCTCGCATGACCCTTTTCCGTTTCTGGCTGCTCTTCCACTGCCTCCAAAGGCTCCGTCCAGATGCACCCACCATCGTCCCAAATGCTGCAGGAAGTGCTCCTCCCCCAAAATCAGATCCAAACTTGGAGTTCTACGATAGCCTCGACATCGTCGGGCTTTGGTTGTCGCGTTGGCTAGAGAGAATGACGAGGTCAACGATGTTAGGAAGTGAGGAGGTGCCGAAGATGAGGAAGAAGACCTAA 2988 0.4629 MASRFWTQGGSDSEEEESDYDEEVDTTVGEASGQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESERVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEEESDEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNIMVDDSVEPDENETQKGAEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVTRKPTFPENSRTLMDILVSMIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRILRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALVFQLTEKLSVLAESNEKATEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASTGGRWQDLSPSQPRQGSGRAGYGGRPMTLGQAAGSGYSRGRGRGSYGGSGRTSQRGSALRGPQGDGPARMTLFRFWLLFHCLQRLRPDAPTIVPNAAGSAPPPKSDPNLEFYDSLDIVGLWLSRWLERMTRSTMLGSEEVPKMRKKT 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00506 995 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Gma08g00506 995 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 892 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma08g00506 995 MobiDBLite consensus disorder prediction 175 193 - -
Gma08g00506 995 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 837 913 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 12 26 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 135 154 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 155 174 - -
Gma08g00506 995 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Gma08g00506 995 MobiDBLite consensus disorder prediction 45 63 - -
Gma08g00506 995 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma08g00506 995 MobiDBLite consensus disorder prediction 194 229 - -
Gma08g00506 995 Gene3D - 725 794 IPR036388 -
Gma08g00506 995 MobiDBLite consensus disorder prediction 1 63 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 134 229 - -
Gma08g00506 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 892 - -
Gma08g00506 995 SMART PINT_4 719 807 IPR000717 -
Gma08g00506 995 Coils Coil 144 171 - -
Gma08g00506 995 Pfam PCI domain 658 786 IPR000717 -
Gma08g00506 995 MobiDBLite consensus disorder prediction 847 864 - -
Gma08g00506 995 MobiDBLite consensus disorder prediction 30 44 - -
Gma08g00506 995 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00506 Gma-Chr8 4187404 4192095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00506 1 919 Eukaryotic Initiation Factors Gene Family AT3G56150 68.777 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00506 K03252 - gmx:100781967 1708.35