Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00503 ATGGACCCAACTTCGATCCCTCCCCCTCCGGCCACCACCGTCCCCTTCACTGTCGAACCCAGCAATCACGTGACCCCCGCCGACAACACCAACACCAACCACCCTCCTTACGATGAGATGATATACACAGCAATCGGGGCTCTGAAGGAGAAAGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATGGAACAAGTGTACAAGGACCTTCCACCCACCCACTCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCGCTGGTCTTCTCATCCTCGTCAAAAAATCCTACAAGCTCCCCGGATCTGATCCTCTTCCCGTGCTCCAGGCCCAAAAGCCCCGCGGTCGCCCCCCAAAGCTCAAATCCCAGCCCAACACTGAGCTCACATGGCCTGCGCTAGCCCTCAACGACAACCCTGCTCTTCAATCCGCAAAAAGAGGCCCGGGTCGTCCCAAAAAGATTGCAGGACCCGTAGGTGTGAGCCCGGGCCCGATGGTGCCGGGCAGAAGGGGTCGTCCACCTGGGACCGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCGGCGATCTCCAGTGGGCTCAAACGACGTCCGGGCCGCCCACCCAAAGCCGAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCTGTTGCTCCCGGCCTGCCCACAGTGCAGCCCATCGTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCAGAGGAAGGCCCAAAAAGATTGTTGCCGGTGCGGGGGCTCCGGCGCTCTCTTCCGTTGGTGGTGCACCACGTGGCCGCGGACGGCCCCGTGGGGTCTTGCCGTTGGTGAGGCCGGGCCGCCCTCAGAAGCTCGCCGTTGGAAGGCCCAAGAATCCTGCAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGATGATCTAAGAAGGAAGCTTGAACACTTCCAATCAAAAGTGAAGGAGTCTCTTGGCACGCTTAAGCCTTATTTTAACCATGAAAGTCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCACCATTGAGGGATGAGACCCATCAAcagccacagccacagccacaggtgtatgaacagcaatatccccagccacagccactgctgcagCAATTTTTTCAACCACATACATCAGCCCCAAGCTAG 1242 0.5451 MDPTSIPPPPATTVPFTVEPSNHVTPADNTNTNHPPYDEMIYTAIGALKEKDGSSKRAIGKYMEQVYKDLPPTHSALLTHHLNRLKSAGLLILVKKSYKLPGSDPLPVLQAQKPRGRPPKLKSQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNVNVIPFAAPVAPGLPTVQPIVPTASVPNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRPQKLAVGRPKNPARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETHQQPQPQPQVYEQQYPQPQPLLQQFFQPHTSAPS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00503 413 MobiDBLite consensus disorder prediction 379 413 - -
Gma08g00503 413 MobiDBLite consensus disorder prediction 16 37 - -
Gma08g00503 413 MobiDBLite consensus disorder prediction 1 15 - -
Gma08g00503 413 MobiDBLite consensus disorder prediction 1 37 - -
Gma08g00503 413 PANTHER HISTONE H1 1 386 - -
Gma08g00503 413 MobiDBLite consensus disorder prediction 374 413 - -
Gma08g00503 413 Gene3D - 29 107 IPR036388 -
Gma08g00503 413 MobiDBLite consensus disorder prediction 141 313 - -
Gma08g00503 413 CDD H15 34 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma08g00503 413 SUPERFAMILY "Winged helix" DNA-binding domain 31 105 IPR036390 -
Gma08g00503 413 PRINTS AT-hook-like domain signature 112 122 IPR017956 GO:0003677
Gma08g00503 413 PRINTS AT-hook-like domain signature 144 155 IPR017956 GO:0003677
Gma08g00503 413 PRINTS AT-hook-like domain signature 244 254 IPR017956 GO:0003677
Gma08g00503 413 PRINTS Histone H5 signature 20 41 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma08g00503 413 PRINTS Histone H5 signature 47 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma08g00503 413 PRINTS Histone H5 signature 180 199 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma08g00503 413 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma08g00503 413 Pfam linker histone H1 and H5 family 34 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma08g00503 413 PANTHER HISTONE H1-LIKE 1 386 - -
Gma08g00503 413 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 246 258 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 302 314 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 271 283 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 203 215 IPR017956 GO:0003677
Gma08g00503 413 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Gma08g00503 413 Coils Coil 316 336 - -
Gma08g00503 413 MobiDBLite consensus disorder prediction 102 126 - -
Gma08g00503 413 SMART h15plus2 31 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00503 Gma-Chr8 4160826 4163867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00503 38 106 Single Myb Histone (SMH) Gene Family AT1G49950 43.478 1.79e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00503 - - gmx:547676 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00503 08 4160826 4163867 Gma08g00503 08 4160826 4163867 ECH