Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00496 ATGAGTCACGAGCTGTTAGAGACCTACGCCTGCATGCCCACGACGGAGCGCGGCCGCGGGATTCTGATCTCCGGCGATGCCAAGTCCAACTCAGTCGTCTACACCAACGGCAGATCGGTGGTCATGATGAACCTCCAGAACCCCCTCCACGTGTCCGTTTACGGGGACCACGCCTACCCCGCCACCGTGGCCCGCTTTTCCCCCAACGGCGAGTGGGTGGCCTCCGCCGACGCCTCCGGCACCGTCAGGATCTGGGGCACGCGAAACGACTTCGTTTTGAAGAAGGAGTTCAGAGTCCTCTCCGCTCGCATCGACGACCTTCAGTGGTCTCCCGATGGTCTCAGAATCGTTGCCTGCGGCGAAGGCAAAGGGAAGTCCTTCGTCCGCGCTTTTATGTGGGATTCGGGGACTAATGTTGGTGAATTCGATGGTCACTCTCGCCGGGTTTTGAGTTGCGCCTATAAACCCACGAGGCCTTTTCGCGTTGTCACTTGTGGAGAGGATTTTCTGGTTAACTTTTATGAGGGACCTCCCTTTAGATTTAAGCTATCTCACAGGGATCATTCAAATTTTGTGAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTATAAGTGTAAGTTCTGACAAGAAGGGTGTCATATTCGATGGAAAGAGTGCAGAAAAGATTGGTGAGCTGTCTTCTGAAGGTGGGCATACTGGTAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAGCAGGTGCTGACTGTATCTGCCGACAAGTCTGCAAAAGTATGGGACATTACTGAGGGCAATAACGGAAAGGTGAAGAAAACATTGACTTGTGCTGGCTCTGGTGGAGTTGAAGACATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATATCTATATTTTTAGCAACTGATCTTGATAAAGCCCCGACAACATTTTCTGGACATATGAAAAATGTTTCCTCCTTAACTATTCTTAGAAGTAACCCTAGGGTGCTATTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGAAAACTACACAGGAAGGAAAATTCTCAAATCAAATGCTTTGCAGCTGTAGAAGAAGAGATTGTTACATCTGGATTTGATAATAAGATAAGGCGAGTTTCTTTACATAGGGATCAGTGTGGAGATACTGAAGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTTTCTCCTGAACTTGCTCTAGTTTCAATTGATTCAGGAGTTGTCATGTTGCGTGGTACCAAAATTGTGTCAACCATAAATCTTGGGTTTATTGTGACAGCATCTGCTGTCTCACCTGATGGAAGTGAAGCCATTATCGGTGGACAGGATGGTAAATTGCACATATATTCTGTTTCTGGTGATACTCTTGTAGAAGAGGTAGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACGTTATTCCCCAGACGTTTCGATGTTTGCATCAGGGGATGTCAATCGAGAAGCTGTAGTGTGGGACCGTGCCTCCCGAGAGGTGAAGCTGAAGAACATGTTGTACCATACTGCTAGGATAAACTGCCTAGCGTGGTCCCCTGATAGCCATAGGATTGCTACAGGATCACTCGACACATGTGTCATCATATATGAAGTTGATCAGCCTGCATCTAGTAGAATTACCATAAAGGGTGCTCATTTAGGTGGGGTTTATGGGTTAGCATTTACTGATGAATATAGTTTGGTTAGCTCAGGACCTTACCTTAGACCTAATGGTATGGTAAGTGGTCAGCCAATGAGCAGCGTCCAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAGGAGGTCGCCGACGCTGTCTCTAGCCGCTGCCCCAACGCCTCCCCTCCCAAAACTCCTGTCCAGTGCCGCCACAAAATGGAGAAGCTGCGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAACTCCTCCTGGGCCCACTTCAAGCTCATGGACTCCATGGAAAAAGGCCCCTCCCCTGTTAAACCCGATATCAACGATTCCgatcataataatactgataacgatgacgatgacgatgatgctggtCAAGATCTCTACCACCACCAGATCAACCACAACGGCCACACCAGAAGCTTGAACAAGCTCTATAGGAACGGCTTTCCAGGTTCCGGTGGTGGTGCCGGTGGGTTTAGGATTCGAATTCCCACTGGGTTGAGCGCGCCGCAGCAGCAGCATCCTGGATCTGCTTCCAAGGTGTTTGGGAAGGTTGGGAATCAGAGATTCAGCCCCAATTTGAATCAAAACCCTAACCCTAATCTTGGGAAGAAGAGGGAGAGAGACCCCGTGGGTGAAGTGGTGGCTGCGATTAAGGTATTGGGAGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCCAGGGAGATCGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTAGAATCGCAACAGCGGATTGTCGAGGCATTTGCCAAGGCCGTTTCGGAAAAGAACAGGAAGAAGAAGCCCAAGACTGTGCCATCAGCCTCTGGTTGA 2649 0.4824 MSHELLETYACMPTTERGRGILISGDAKSNSVVYTNGRSVVMMNLQNPLHVSVYGDHAYPATVARFSPNGEWVASADASGTVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKKGVIFDGKSAEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDITEGNNGKVKKTLTCAGSGGVEDMLVGCLWLNDYLVTVSLGGTISIFLATDLDKAPTTFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGKLHRKENSQIKCFAAVEEEIVTSGFDNKIRRVSLHRDQCGDTEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGTKIVSTINLGFIVTASAVSPDGSEAIIGGQDGKLHIYSVSGDTLVEEVVLEKHRGAISVIRYSPDVSMFASGDVNREAVVWDRASREVKLKNMLYHTARINCLAWSPDSHRIATGSLDTCVIIYEVDQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGPYLRPNGMVSGQPMSSVQWYSLGRGNLKATHWQEVADAVSSRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWAHFKLMDSMEKGPSPVKPDINDSDHNNTDNDDDDDDAGQDLYHHQINHNGHTRSLNKLYRNGFPGSGGGAGGFRIRIPTGLSAPQQQHPGSASKVFGKVGNQRFSPNLNQNPNPNLGKKRERDPVGEVVAAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNRKKKPKTVPSASG 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Gma08g00496 882 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 597 - -
Gma08g00496 882 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Gma08g00496 882 Pfam WD domain, G-beta repeat 186 212 IPR001680 GO:0005515
Gma08g00496 882 Pfam WD domain, G-beta repeat 63 85 IPR001680 GO:0005515
Gma08g00496 882 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Gma08g00496 882 SUPERFAMILY YWTD domain 224 401 - -
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Gma08g00496 882 Coils Coil 653 673 - -
Gma08g00496 882 Gene3D - 12 338 IPR015943 GO:0005515
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Gma08g00496 882 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 568 IPR011047 -
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Gma08g00496 882 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 597 - -
Gma08g00496 882 SMART WD40_4 47 86 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 220 262 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 178 217 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 525 563 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 268 310 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 135 175 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 314 354 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 90 134 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 438 476 IPR001680 GO:0005515
Gma08g00496 882 SMART WD40_4 481 520 IPR001680 GO:0005515
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 267 - -
Gma08g00496 882 CDD WD40 57 350 - -
Gma08g00496 882 MobiDBLite consensus disorder prediction 690 724 - -
Gma08g00496 882 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Gma08g00496 882 Gene3D - 8 597 IPR015943 GO:0005515
Gma08g00496 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Gma08g00496 882 SMART 118neu2 616 696 IPR006578 -
Gma08g00496 882 Pfam Myb/SANT-like DNA-binding domain 621 691 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00496 Gma-Chr8 4108978 4117190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00496 184 294 Miscellaneous Gene Families AT5G08390 30.631 1.06e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma08g00496 Myb_DNA-bind_4 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00496 K24736 - gmx:100794702 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00496 08 4108978 4117190 Gma08g00496 08 4108978 4117190 ECH
Gma05g02365 05 44514416 44519621 Gma08g00496 08 4108978 4117190 GST