Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00490 ATGGCCATTTTTGCGTATTTATACTTTAAAGAAATAGGTCGAACCCAACCCAACCCAATAACAGAAGACAGTGGCAGACAGATAAATACTAAAGAGTGGCTTACTAGTCCCAAACCTCACACGACTCCTTTGTTGCGTTGTATTGCCTCTCTCGCCGAAACCCTCGTTTCCAACTTCTACAGAATCCATTTCTTCGCCATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTTCCCCAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA 1716 0.4161 MAIFAYLYFKEIGRTQPNPITEDSGRQINTKEWLTSPKPHTTPLLRCIASLAETLVSNFYRIHFFAMDIEEDIRSLQLDSAAEDNNGVVNPEDGKPEEVEKYDKMDEDPKQEVEAEPKAVEAEPKVKDKEIPSVQDEEDVPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVMCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00490 571 CDD eRF3_C_III 463 571 - -
Gma08g00490 571 PANTHER BNAA06G12300D PROTEIN 58 114 - -
Gma08g00490 571 PANTHER BNAA06G12300D PROTEIN 140 565 - -
Gma08g00490 571 Gene3D - 126 369 IPR027417 -
Gma08g00490 571 CDD EF1_alpha 149 369 - -
Gma08g00490 571 Gene3D Translation factors 464 571 - -
Gma08g00490 571 PANTHER TRANSLATION FACTOR 140 565 - -
Gma08g00490 571 PANTHER TRANSLATION FACTOR 58 114 - -
Gma08g00490 571 Gene3D Translation factors 374 459 - -
Gma08g00490 571 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 465 570 IPR009001 -
Gma08g00490 571 MobiDBLite consensus disorder prediction 84 126 - -
Gma08g00490 571 Pfam Elongation factor Tu C-terminal domain 462 570 IPR004160 -
Gma08g00490 571 Pfam Elongation factor Tu domain 2 389 455 IPR004161 GO:0005525
Gma08g00490 571 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 201 216 IPR031157 -
Gma08g00490 571 PRINTS GTP-binding elongation factor signature 149 162 IPR000795 GO:0003924|GO:0005525
Gma08g00490 571 PRINTS GTP-binding elongation factor signature 228 238 IPR000795 GO:0003924|GO:0005525
Gma08g00490 571 PRINTS GTP-binding elongation factor signature 244 255 IPR000795 GO:0003924|GO:0005525
Gma08g00490 571 PRINTS GTP-binding elongation factor signature 288 297 IPR000795 GO:0003924|GO:0005525
Gma08g00490 571 Pfam Elongation factor Tu GTP binding domain 145 351 IPR000795 GO:0003924|GO:0005525
Gma08g00490 571 SUPERFAMILY Translation proteins 368 461 IPR009000 -
Gma08g00490 571 CDD eRF3_II 376 457 - -
Gma08g00490 571 MobiDBLite consensus disorder prediction 90 126 - -
Gma08g00490 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 380 IPR027417 -
Gma08g00490 571 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 145 374 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00490 Gma-Chr8 4062823 4074772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00490 145 566 Eukaryotic Initiation Factors Gene Family AT5G60390 38.353 6.46e-97 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00490 08 4062823 4074772 Gma08g00490 08 4062823 4074772 ECH
Gma05g02360 05 44474794 44483251 Gma08g00490 08 4062823 4074772 GST