Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00487 ATGTCAGACATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCTATTGATACCCATACAGGGCAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAACAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTTTTTGAATTCATGGAGACGGACCTAGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCACCATCTGATACAAAATCCTACCTGCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGCTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACGGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGTTCTTTATTTCCGATGGTAACTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGACTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAGTTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAACTGA 1092 0.424 MSDMDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMVTDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESRTSDFNLQEGPTVLSPPRKSRRVMPGRDGFEGSSLQADKVDASFGDFN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00487 363 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gma08g00487 363 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Gma08g00487 363 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Gma08g00487 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gma08g00487 363 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Gma08g00487 363 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00487 363 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00487 363 MobiDBLite consensus disorder prediction 295 363 - -
Gma08g00487 363 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gma08g00487 363 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00487 363 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Gma08g00487 363 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00487 Gma-Chr8 4047066 4051106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00487 4 357 Core Cell Cycle Gene Families AT1G73690 77.966 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gma08g00487 Pkinase 8.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00487 K02202 - gmx:100776618 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00487 08 4047066 4051106 Gma08g00487 08 4047066 4051106 ECH
Gma05g02357 05 44457871 44463320 Gma08g00487 08 4047066 4051106 GST
Gma08g00487 08 4047066 4051106 Gma07g00902 07 9815594 9820182 PCT
Gma08g00487 08 4047066 4051106 Gma09g01654 09 42077046 42082165 PCT
Gma07g00902 07 9815594 9820182 Gma08g00487 08 4047066 4051106 PCT
Gma09g01654 09 42077046 42082165 Gma08g00487 08 4047066 4051106 PCT