Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00474 ATGCCTGTCACAAACACAACAACACCAACTGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAACCACCATCAGCACCCCATTTCAGAAACCGATCCAAACCCTCAAATCCCTTCCATTATCCAATCCACTAGGTGCAAGTCTACCATTTCCTCCTTGCTCCTCTCCACTTTCTCCAACAACACCTCCTCCAACAATGACACTCCCACCACCTTCAATGCCACTGCCCATAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTGGGGTGCACCGCCGGAGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGAAAGAAAACAAGAAAAAAGAAGCACAAGAGAAGCAGCAGCAGCAGCAAGAACAAGACTTTCCATGGTGGGGTTCTAGAAGGGTCCAATCCAGAGTGCGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAAGAATGTCTCTTCTGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACTGAAACCTTCACTTTTCTGGACAGTACTGATCCTGACATTTTCACACCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAAAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGGCTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATCTATCACTTTCAGTGTATAAAACAATGGGCTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCGGCTCGACACTGA 1134 0.4638 MPVTNTTTPTVAEHIKWRRPRNQFNHHQHPISETDPNPQIPSIIQSTRCKSTISSLLLSTFSNNTSSNNDTPTTFNATAHSKKKSNFSASTFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRSSSSSKNKTFHGGVLEGSNPECVDFQDVWCGPGIGFSTDAAAAASVDCVVARKNVSSARGKIDVDKITHRERSSYVGRRTETFTFLDSTDPDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDHFKDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTSKHQVDKECSICQEEYEAGNELGRLNCEHIYHFQCIKQWAAQKNFCPVCKQQVAARH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00474 377 MobiDBLite consensus disorder prediction 114 142 - -
Gma08g00474 377 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 377 - -
Gma08g00474 377 SUPERFAMILY RING/U-box 320 374 - -
Gma08g00474 377 SMART ring_2 329 369 IPR001841 -
Gma08g00474 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 375 IPR013083 -
Gma08g00474 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 377 IPR045191 GO:0061630
Gma08g00474 377 Pfam Ring finger domain 327 370 IPR001841 -
Gma08g00474 377 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Gma08g00474 377 MobiDBLite consensus disorder prediction 119 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00474 Gma-Chr8 3938955 3943497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00474 11 284 C3H Transcription Factor Family AT1G73760 42.662 2.85e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00474 - - gmx:100819907 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00877 07 9477839 9484656 Gma08g00474 08 3938955 3943497 ECH
Gma08g00474 08 3938955 3943497 Gma08g00474 08 3938955 3943497 ECH
Gma05g02345 05 44372411 44375818 Gma08g00474 08 3938955 3943497 GST