Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00446 ATGGTCGCAAGAAGAAAAGTCCTTAACTTGTTATCAACCTTAATTCCCCACCACGCCAATGCATTTTCTCGTCACCCGCACGACCACAACCCCTTTACCAAAATCCCCAAAACCCTTTTTAGGGTTTATTATGGAACCCAATCATCAGCATCGAAACTCCCCGAATATGAGATGCCATCGGTGACGTGGGGCGTGATCCAGGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATCATCCCCGACGAATTGCACGACCTCGAGCTTCCCTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAGAAATTAGGTCTCACCGTCGACGACATCAACAACTACCCTCTAATGTTGGGGTGCAGTGTCAGAAAAAACATGATCCCCGTCTTGGGGTACTTGGAAAAAATTGGGATCGCAAGGCCCAAGCTTGGTGGATTTGTTAAGAATTACCCGCAGGTATTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTTAGGGGGCTTGATGTGGAGAAAGATGATATTGGCTATGTGTTGCAAAAGTACCCTGAACTTCTTGGCTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATTGGTCCAATGGTCACTCAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCGATGATTGATTACTTGGTCGATTTAGGGCTGCCGAAGAAGGTTTTGGCCAGGATGTTGGAGAAGAGAGCTTATGTTCTTGGCTATGATCTTGAAGAGACTGTGAAACCCAATGTGGAATGTTTGATTAGCTTTGGTGTTGGGAGGGATTGTTTGGCTTCGATTATTGCTCAATATCCGCAGATTCTCGGGCTGCCTCTTAAGGCTAAGTTATCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGACCCTGAAGGGTTTGCACGCGTGGTGGAGAACATGCCACAGGTGGTTAGTCTCCACCAACATGTGATTATGAAGCCGGTTGAGTTTCTCCTTGGAAGGACGATACCGGCACAGGACGTGGCAAGTATGGTGGTCAAGTGTCCTCAGTTGGTGGCACTGAGAGTTGAGCTCATGAAGAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGCAAGAGCTTGTGGAATTCCCTGAGTATTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCCTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAGAGTGTAGGCCCCAGATTCTGTATGGGAGGGAAATTAGAGCTACCAGGGAATGGCCTAGTGTCAGATGAGGAAGAGGAGAGTGATGATGAACTATTATACAGACGAACTGTTTCTCTTTAG 1500 0.4667 MVARRKVLNLLSTLIPHHANAFSRHPHDHNPFTKIPKTLFRVYYGTQSSASKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVDLGLPKKVLARMLEKRAYVLGYDLEETVKPNVECLISFGVGRDCLASIIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLHQHVIMKPVEFLLGRTIPAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGRPLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNGLVSDEEEESDDELLYRRTVSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00446 499 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 227 258 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 336 366 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 299 331 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 Pfam mTERF 141 449 IPR003690 GO:0003690|GO:0006355
Gma08g00446 499 Gene3D Transcription termination factor 3, mitochondrial 246 459 IPR038538 -
Gma08g00446 499 Gene3D Transcription termination factor 3, mitochondrial 105 245 IPR038538 -
Gma08g00446 499 PANTHER EXPRESSED PROTEIN 47 482 - -
Gma08g00446 499 PANTHER CGI-12 PROTEIN-RELATED 47 482 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00446 Gma-Chr8 3726551 3728258 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gma08g00446 mTERF 8e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00446 K15032 - gmx:100809590 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02320 05 44172385 44172825 Gma08g00446 08 3726551 3728258 GST
Gma08g00446 08 3726551 3728258 Gma07g00897 07 9722022 9724222 PCT
Gma08g00446 08 3726551 3728258 Gma09g01664 09 42154830 42156468 PCT