Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00444 ATGTCATCGCCAAACTCCGCCCGTCAGCCCCACGCGCCGCTCCTTCTCCCGCGCCCCGATGCCGCCGCCCGCCTCCCCGTCCTGGCGCTCCTCCTCGGCCGCcgcggccactccgtcatggtccgggagacggcggcgcgtgagctggaggagcggcgcgccgactggacctactcgaagccggtggtggcgctggacatgacgtggaacatggccttcgtcgtggtctcggcggtcatgctcgcctgcaccgtcaaggagaaccccaacacgccgatccgctggtggatctgcggctacgcgctgcagtgcctcctccacgtggccctcgtgtggctcgagtaccgtaggaggaacgacgcgcccggggacgaggattctgctgccaacctagattacgacgacgtcaacgacagcgacgaggacgatgttggaacctctgggagttcctcttccaccggATTCACAAAACGATGTGCATCATTGAATACCATGATTTCATTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTATACTGGTTGACTGTTGTCTTTCTAGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTATACTTCCAAAATACAGATTTCAAATGTTAAGCAATGAGGAAACACCTGGTGAGGGAGGGGGAGGATCAATGATTCCTATGGAGACCAGCAATGGTTACTCGGTGAATGAACGAACACTTTCACCTGAGGATGCAGAATGCTGTATATGCATCTCTTCCTATGAGGATGGAGCTGAACTTCACGTTCTCCCTTGTAACCATCATTTCCACTCTACGTGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGATAATATCAAGACATGAAAAAATAGAACCTCTCCCAATTTGCTCGGCGGAGACCGTGGCAGTTTCCGGATGCGGCTTTGGCGGTCGTGGACGCGGCGGCGACAGGGGACGAGGGTGGCGCAGGACAGCAGGGCGCCGTGGCGAGGAGGAGGAGTGGGTACCAGTGACAAAGCTAGGACGCCTGGTGAAGGAGGGTAAAATCCGTAGCCTGGAGCAAATCTACCTACACTCGCTCCCAATCAAGGAATACCAAATCATCGACACCTTCGTGGGGCCCACCCTGAAGGACGAGGTGATGAAGATCATGCCCGTCCAGAAACTCTCTGTTATTCCTGTCAGGAGAGGGTATTGGGGTAACAAGATCGGAAAGCCCCACAACGTTCCTTTCAAGGTTACCGGCAAGTGTGGTTCTGTTACCGTTCGCATGGTCCCCGCTCCTCGTGGGTCCGGAATTGTTGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACAGATCTATTGGCAAAGCCAACAGGAAAGGCCCTGATCCTCGAGGAGGAAAGGGTGGAGGCTTGA 1746 0.3975 MSSPNSARQPHAPLLLPRPDAAARLPVLALLLGRRGHSVMVRETAARELEERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLLHVALVWLEYRRRNDAPGDEDSAANLDYDDVNDSDEDDVGTSGSSSSTGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLTVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYRFQMLSNEETPGEGGGGSMIPMETSNGYSVNERTLSPEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQIISRHEKIEPLPICSAETVAVSGCGFGGRGRGGDRGRGWRRTAGRRGEEEEWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEYQIIDTFVGPTLKDEVMKIMPVQKLSVIPVRRGYWGNKIGKPHNVPFKVTGKCGSVTVRMVPAPRGSGIVAIRVPKKVLQFAGIDGVFTSSRGSTKTLGNFVKATFDCLLKSYGFLTLEFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVEA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00444 581 SUPERFAMILY Ribosomal protein S5 domain 2-like 469 549 IPR020568 -
Gma08g00444 581 Gene3D - 456 549 IPR014721 -
Gma08g00444 581 Gene3D - 395 454 - -
Gma08g00444 581 Pfam Ring finger domain 293 335 IPR001841 -
Gma08g00444 581 SUPERFAMILY RING/U-box 285 340 - -
Gma08g00444 581 SMART ring_2 294 334 IPR001841 -
Gma08g00444 581 PANTHER TARGET OF ERK KINASE MPK-1 1 345 - -
Gma08g00444 581 CDD RING-H2_PA-TM-RING 293 335 - -
Gma08g00444 581 Pfam Ribosomal protein S5, C-terminal domain 477 549 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gma08g00444 581 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 345 - -
Gma08g00444 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 340 IPR013083 -
Gma08g00444 581 MobiDBLite consensus disorder prediction 127 142 - -
Gma08g00444 581 MobiDBLite consensus disorder prediction 126 155 - -
Gma08g00444 581 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00444 Gma-Chr8 3711195 3718678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00444 1 344 C3H Transcription Factor Family AT1G68070 67.330 3.21e-164 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00444 - K13148 gmx:100805848 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02317 05 44161018 44163160 Gma08g00444 08 3711195 3718678 GST