Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00439 ATGGCCACTGGGAAGACGGTTATGTGTTCGCTGAGCCAGTTGCGTCCGCTAACATGCGCATCGACGTCAGCGTCACGATTAGTGCCCCAGCCACCCGACCTCATCAAGTGGGTAACCAGAGAAGGTGGCTTCGTGCACCGCGCCGTCAAGATAACACAACTCGACTCCTCCAACGGACTGGGCCTGGTGGCCAAGGAAGAAATTCCACGTGGCAGTGATCTTATTGTGCTGCCGCACCATCTTCCCTTGCGCTTCACCTCTCTCCAACAAGACCCTTCTCTGCTCCATCACTTGGCGCGCCAAGTCCCTGAGGAACTATGGGCAATGAAGCTGGGTTTGAAGCTTCTGCAAGAAAGGGCAAAAGTTGGATCGTTCTGGTGGCCATATATAAGTAATCTTCCAGAAACATACACCGTGCCTATTTTCTTTTCCGGGGAGGACATAAAGAACTTGCACTATGCTCCTATTCTTCATCAGGTAAACAAAAGGTGTCGATTTCTTCTTGATTTTGAGCGAGAAGTCAAGCGTACTTTGGTAAGTCTTACACAAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTATCATCTAGAGCGTTTCGATTGTATGGTGAAAAGGATCCCAATGGGATACGCATTGACATACCAATGATGCTCCCCCTAATTGATATGTGCAATCATAGTTTCAATCCGAATGCTAGAATTGTTCAAGAACAAGATACCAGTAACTCAAGGATGCAAGTGAAGGTTGTGGCCGAGACAGCAATCAAAGAAGATGATCCTCTGTTACTTTGCTATGGATGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACGGCAGCTGGAGTTTCTTCACCAAACTTCTCAGCACCTGTTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTGCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGCCCGCTTGTTGGCTGCATTGAGGGTACTTCTTTCAAGTAATGTGGAAACTGTGCAGAAGTATGACCTCAGCACACTCCAGTCTTTAGATGCCGAGGCTCCTCTAGGTGTTGCAAATGAGATAGCTGTGTTTCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCTATTCAGTACAGAATCCAAAAGAAATCTGTGATTATAGACGTAATGAGAAATATCTCAAGGAGGTTAAAGCTTCTATCATCAAAGGAAACAGCAACCGCAGAAGGCTAA 1419 0.4574 MATGKTVMCSLSQLRPLTCASTSASRLVPQPPDLIKWVTREGGFVHRAVKITQLDSSNGLGLVAKEEIPRGSDLIVLPHHLPLRFTSLQQDPSLLHHLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFSGEDIKNLHYAPILHQVNKRCRFLLDFEREVKRTLVSLTQDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGIRIDIPMMLPLIDMCNHSFNPNARIVQEQDTSNSRMQVKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSAPVPWQELILSQLNLAGETADLKVSLGGQETVEARLLAALRVLLSSNVETVQKYDLSTLQSLDAEAPLGVANEIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMRNISRRLKLLSSKETATAEG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00439 472 PANTHER F21J9.27 6 469 - -
Gma08g00439 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 469 - -
Gma08g00439 472 SMART set_7 47 283 IPR001214 GO:0005515
Gma08g00439 472 Pfam SET domain 59 277 IPR001214 GO:0005515
Gma08g00439 472 Gene3D - 328 469 IPR036464 -
Gma08g00439 472 ProSiteProfiles SET domain profile. 49 277 IPR001214 GO:0005515
Gma08g00439 472 CDD SET_LSMT 48 291 - -
Gma08g00439 472 SUPERFAMILY SET domain 29 295 IPR046341 -
Gma08g00439 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Gma08g00439 472 Pfam Rubisco LSMT substrate-binding 327 447 IPR015353 -
Gma08g00439 472 Gene3D set domain protein methyltransferase, domain 1 6 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00439 Gma-Chr8 3669280 3672438 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma08g00439 SET 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00439 - - gmx:100778387 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02310 05 44107530 44110060 Gma08g00439 08 3669280 3672438 GST