Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00412 ATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1395 0.4366 MDDVKDKVKGFMKKVNNPFSSSSSAKFKGQGRVLGSSSSTPANSNPTPRPYPNSQKPSSSSAVTNPKPSPQKTEQNKTTDKPRKDDGFDPFDSLVTNSNRSQNGYSLNVFECPICKQPFRSEEEVSAHVDGCLNNPVERGSDDGNGVSESDGGSNDTNTELEVCVGTYISGKPSEGSVDVILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEFPSEEQIKFIQRAIVLLESQLVQQGPPKRDDLPSATSTEMGPKAETKPVDRQVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKIADSQLLIPKSLKEKQAKVSRKRYTKTIIRIQFPDGVVLQGVFAPWETTIALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00412 464 Pfam UBX domain 354 404 IPR001012 GO:0005515
Gma08g00412 464 SUPERFAMILY PUG domain-like 174 259 IPR036339 -
Gma08g00412 464 MobiDBLite consensus disorder prediction 1 102 - -
Gma08g00412 464 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 463 - -
Gma08g00412 464 MobiDBLite consensus disorder prediction 74 90 - -
Gma08g00412 464 Gene3D - 170 258 - -
Gma08g00412 464 Gene3D Classic Zinc Finger 106 137 - -
Gma08g00412 464 SMART PGNneu 176 243 - -
Gma08g00412 464 MobiDBLite consensus disorder prediction 15 44 - -
Gma08g00412 464 ProSiteProfiles UBX domain profile. 353 437 IPR001012 GO:0005515
Gma08g00412 464 CDD PUB 169 259 - -
Gma08g00412 464 MobiDBLite consensus disorder prediction 264 285 - -
Gma08g00412 464 Pfam PUB domain 175 249 IPR018997 -
Gma08g00412 464 Gene3D - 347 440 - -
Gma08g00412 464 SUPERFAMILY Ubiquitin-like 325 437 IPR029071 -
Gma08g00412 464 MobiDBLite consensus disorder prediction 136 159 - -
Gma08g00412 464 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00412 Gma-Chr8 3459414 3463745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00412 1 385 C2H2 Transcription Factor Family AT2G01650 56.829 9.20e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g00412 UBX 0.00012 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00412 K14011 - gmx:100779271 909.057