Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00405 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTGGAAGAGGATAACTTGCTCTCCCAATATATTTTTAATCATGGGGAAGGGCGATGGAATTTGCTGGCTAAACGTTCAGGATTAAAGAGAACTGGGAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTAAAACGGGGAAATTTAACCCCACAAGAGCAACTTATAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATttgccaggcagaacagacaatgaaatcaagaactattggagaactaggatTCAGAAACAAGCAAGACATTTGAAAATTTACACTGACAGCAGAGAGTTTCAAGAACTTGTTAGGCGTTTCTGGATGCCTAGATTGCTTCAGAAAGCAAAAGAATCATCTTCTTCAAACATGTCAATTCAAAACCAGGCAATTCCTATGCCTTTTGATTATGTTTCTCAGCATTTAACTGTTGGGACCATACCTCCTTGGCAGGGACCTTGTATGAATGAAGCTGGTCCCACTTACATGGACCAACATGAGCAGAACTCAGACTCGGAACACAACAATGGTTCATGCATCTCCTTGTCTGAGTCAGCAAATATTCCAAAAGTGCCTCAGCATTTTGGACACACCACCATCACCCAATTTCATGCCTTGAATACCAATGACTTTGGCACCTTCACATATGAAGGTTATAATGTAAACAACAATGTCTATGAGATGGACAACTTCAAAACGACTACTACATGGGTGGCTGAGGATGCGCAATACCCAATTGGTGATTGTCAAATGGTAGGAAGCAATTGGGTAAACAACGATTTTGCATGTAACATGTGGAACATGGATGAACTGTGGCAGTTTAGCAAGTTACAAAAATAA 939 0.3845 MSTSKSVSSSSEDDNELRRGPWTLEEDNLLSQYIFNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLIILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIYTDSREFQELVRRFWMPRLLQKAKESSSSNMSIQNQAIPMPFDYVSQHLTVGTIPPWQGPCMNEAGPTYMDQHEQNSDSEHNNGSCISLSESANIPKVPQHFGHTTITQFHALNTNDFGTFTYEGYNVNNNVYEMDNFKTTTTWVAEDAQYPIGDCQMVGSNWVNNDFACNMWNMDELWQFSKLQK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00405 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Gma08g00405 312 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 307 - -
Gma08g00405 312 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Gma08g00405 312 Gene3D - 75 118 - -
Gma08g00405 312 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gma08g00405 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 307 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma08g00405 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Gma08g00405 312 MobiDBLite consensus disorder prediction 195 214 - -
Gma08g00405 312 Gene3D - 19 71 - -
Gma08g00405 312 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gma08g00405 312 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gma08g00405 312 SMART sant 18 68 IPR001005 -
Gma08g00405 312 SMART sant 71 119 IPR001005 -
Gma08g00405 312 CDD SANT 76 115 IPR001005 -
Gma08g00405 312 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gma08g00405 312 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00405 Gma-Chr8 3412345 3414081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00405 14 307 MYB Transcription Factor Family AT1G68320 46.205 3.62e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma08g00405 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00405 K09422 - gmx:778045 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00842 07 8977478 8978728 Gma08g00405 08 3412345 3414081 ECH
Gma08g00405 08 3412345 3414081 Gma08g00405 08 3412345 3414081 ECH
Gma05g02278 05 43819126 43820924 Gma08g00405 08 3412345 3414081 GST