Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00404 ATGGCTGAATTCACTGCAGATTTGCAAAGTCTTAGGTTTCCTTTCTTAGATATTGATAACATGGAAATTCAGAACTTCATGATGCCATTCTCCTGTGAAAGCTTCTTAGGCTCTCCAGAAGCTGAATTTCCAGGAAACTTATTGGAAGAAAATTTTCCGGCTCTTGTTCAATGTGTCGATCACAATGAAGTTCCAGTTTTAGTTCCTATTGGTTCAGTTAAAAATGAAATCCATGAAGGTCAAAAGAGGAAAGCAACTGATATATGTGAGCCAAGTTCTGCAAATTCAACTCCTGCTGTTTCTGAGAGTGGAAGCAAGACAAAAAATAGTTCTGGAAGAGGCAAGAGAGTAAAGAGGAATTCGATAGAAGACAAGAAACCAAATGAAGTAGttcatgttagagccaaacgtggtcaagctactgatagtcacagtttagcagaaaggGTTAGAAGAGGGAAAATTAATGAAAAACTTAGGTGTTTGCAGAACATTGTCCCAGGATGTTACAAGACAATGGGTATGGCAATAATGTTGGACGAGATAATAAACTATGTCCAGTCCTTGCAACATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCAAGTACCTACTATGACTTAAATTCAGAGTCAGATGCTTTGGAAACAATGCAGAGAGCAAGGGCATCCGAGGTGAAAGAGTTGGGCAAGTGTGTGAGAGAAGGAAGTGAAGAAGTTTCTTGCTTTGAACCAACATGGCCATGGCCTCTGTGA 759 0.3689 MAEFTADLQSLRFPFLDIDNMEIQNFMMPFSCESFLGSPEAEFPGNLLEENFPALVQCVDHNEVPVLVPIGSVKNEIHEGQKRKATDICEPSSANSTPAVSESGSKTKNSSGRGKRVKRNSIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTYYDLNSESDALETMQRARASEVKELGKCVREGSEEVSCFEPTWPWPL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00404 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 189 IPR011598 GO:0046983
Gma08g00404 252 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 249 IPR024097 GO:0006355
Gma08g00404 252 SMART finulus 145 195 IPR011598 GO:0046983
Gma08g00404 252 MobiDBLite consensus disorder prediction 88 110 - -
Gma08g00404 252 Gene3D - 136 229 IPR036638 GO:0046983
Gma08g00404 252 PANTHER TRANSCRIPTION FACTOR BEE 1 15 249 - -
Gma08g00404 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 206 IPR036638 GO:0046983
Gma08g00404 252 CDD bHLH_AtBPE_like 129 214 - -
Gma08g00404 252 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Gma08g00404 252 MobiDBLite consensus disorder prediction 78 145 - -
Gma08g00404 252 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00404 Gma-Chr8 3403259 3405137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00404 61 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.703 4.56e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g00404 HLH 0.00023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00404 - - gmx:100777160 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00841 07 8963907 8965766 Gma08g00404 08 3403259 3405137 ECH
Gma08g00404 08 3403259 3405137 Gma08g00404 08 3403259 3405137 ECH
Gma05g02277 05 43809643 43811553 Gma08g00404 08 3403259 3405137 GST