Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00399 ATGGAAGAAAAGCTACCTCCTGGGTTCAAGTTCCACCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATGTTGGCTTCACATCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCATCGATGGGCGAGAAGGaatggtatttcttcagcttgaaagatcggaaatatccaactgggcttcgaaccaaccgagccactgaatcagggtattggaaaaccacaggaaaagataaggaaatatttggtggtggagttttgatagggatgaagaaaaccttggtcttttatatgggcagagctccgaggggtgagaaaagtaactgggttatgcacgaatataggcttgcAAACAAACAACCCTATAGATCTTCAAAGGAAGAAAGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCCAAGAAACCACAGCAGACATCCTCTTCCCAACCATCTCAAGAGTCTCCTACCTCAATGGTCAACGAATTTGGTGATGTTGACCTACCAAATCTAAATAGCATTGCAAATTCATCCAGTAGCTTCACCAATAATATTGCATACAATATTAATGGTGATCCTAGCAATGCTGTTAACACCAATATGAACTTGACCATGAATTGGCCTTCTGGATTTCTGAATCCAAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATCACAACTTAGAAATACTTATCAACAAAGAGAAGCTGCGACCAGTAGTGATCATCACTTTGCAACATATGTTCCTCAAGGATTTTCTCACAATAATACTATTGGAACTGAACATCACCTCATGACTCCAAATCTCAGTGCTACTTCTTCTTCTTCCAAAGCTTTAGAGTATTCTTGTGTGCCGCAGCAGGAGCAACCATTTAATATGGACTCCATTTGGTGA 942 0.3174 MEEKLPPGFKFHPTDEELITYYLLRKVSDVGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLANKQPYRSSKEERVICRVFQKSSAPKKPQQTSSSQPSQESPTSMVNEFGDVDLPNLNSIANSSSSFTNNIAYNINGDPSNAVNTNMNLTMNWPSGFLNPNLSVNSLLLKASQLRNTYQQREAATSSDHHFATYVPQGFSHNNTIGTEHHLMTPNLSATSSSSKALEYSCVPQQEQPFNMDSIW 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00399 313 MobiDBLite consensus disorder prediction 150 178 - -
Gma08g00399 313 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Gma08g00399 313 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Gma08g00399 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 248 - -
Gma08g00399 313 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Gma08g00399 313 MobiDBLite consensus disorder prediction 153 175 - -
Gma08g00399 313 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gma08g00399 313 PANTHER BNACNNG63190D PROTEIN 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00399 Gma-Chr8 3366570 3369859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00399 1 313 NAC Transcription Factor Family AT3G18400 55.821 3.94e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma08g00399 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00399 - - gmx:100776092 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00399 08 3366570 3369859 Gma08g00399 08 3366570 3369859 ECH
Gma05g02275 05 43788174 43791744 Gma08g00399 08 3366570 3369859 GST
Gma08g00399 08 3366570 3369859 Gma07g00835 07 8900313 8903291 PCT
Gma08g00399 08 3366570 3369859 Gma09g01701 09 42664180 42667066 PCT
Gma07g00835 07 8900313 8903291 Gma08g00399 08 3366570 3369859 PCT
Gma09g01701 09 42664180 42667066 Gma08g00399 08 3366570 3369859 PCT