Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00395 ATGAGAGACATGAAAGACGCAGGTGCCCTGGGAGGCAAGACAGCACGAGCCTGCGATAGCTGCGTAAGCAGAAGGGCAAGGTGGTTCTGTGCAGCAGATGATGCTTTCCTCTGCCATGCTTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGACACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGCAACCACAACCACTACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAACACGAAGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGACAACGATGAAACGGAGGAACAGATGCTGTGTCGCGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGCTTTTCTGACATGGATTTTTCTGAATTTGCTGCTGATGTTGAAGGCCGGCTTGACAAAGAAGACGATGAAATAAGTGCGTATGTGGGAGGAGGAGAGGGAGTTCAAGGTGTATTGGCCAAGGTTAAGGGCGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGATCAGTGATGATGCCTTTCATTGGAATAATATTGAGTCTGTGGTGTCAGATGCCCGGGAAGAGAAGGGGTGTGTGGTGCCATGTGATGGTGGGGTTAGTGAACAAGGAGGAATAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCCCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGATGGAGAAGGAAGAAGCTTAAGGGGACACCTAGATGGTGGAAGAGAAGCAAGAGTGTCGAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA 1116 0.4803 MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHACDTLVHSANQLASRHERVRLQTASSKATTTTTHAWHSGFTRKARTPRHNNSKHFALQQRLKHEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFSEFAADVEGRLDKEDDEISAYVGGGEGVQGVLAKVKGEEEIDGDVACYLESVFDMISDDAFHWNNIESVVSDAREEKGCVVPCDGGVSEQGGIKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVDGEGRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00395 371 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Gma08g00395 371 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 364 - -
Gma08g00395 371 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Gma08g00395 371 Pfam CCT motif 316 358 IPR010402 GO:0005515
Gma08g00395 371 CDD Bbox1_BBX-like 17 60 - -
Gma08g00395 371 SMART bboxneu5 13 60 IPR000315 GO:0008270
Gma08g00395 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 364 - -
Gma08g00395 371 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00395 Gma-Chr8 3329419 3331437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00395 7 358 C2C2-CO-like Transcription Factor Family AT1G25440 41.549 2.99e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma08g00395 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00395 - - gmx:100793296 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02270 05 43743008 43744891 Gma08g00395 08 3329419 3331437 GST
Gma08g00395 08 3329419 3331437 Gma07g00829 07 8833626 8844077 PCT
Gma08g00395 08 3329419 3331437 Gma09g01709 09 42725927 42728367 PCT
Gma07g00829 07 8833626 8844077 Gma08g00395 08 3329419 3331437 PCT
Gma09g01709 09 42725927 42728367 Gma08g00395 08 3329419 3331437 PCT