Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00382 ATGACCGAAAATAAGTCAACCAGTAAGATCACTAAGAAACAAGAGACAAAAAAAGTTTCTAGTTTCAGCCATCAGCCCCCTAGAAAGCAACCTCGGAAGGGTGAAAACCCTACTAGACTCATACCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCGGTTTTGTCTATGGATGACACATTTTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTCAAGGGGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAGCATGAAAAGGTGGGAGTTATTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGCTGGAAGAAGCAGCTAACTATAGCTAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTTGATGGAACCTCAAAATTCAAAGATTTGCATCAAACAGTACAAGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGTAGACTCCCTATTGCCAGTGGTATACAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATAGGTGGCTTGCCACTGTTCCTTATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGCCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTCAGGACGAATCACCCACTAAAGATCCTATTTCCATGTTTCCCAAATCTCAGAGGAGGATTTTGGTATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACACGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCCAGAGCATCGAGATAGTTAAAAACAATCCCTCTTCATCTGTTGCTATGAATAAAGAAAAAGAGAACCTTCTAACTAGGGGTAATTCTTCGGTCTCTAAGATAGGGCCCAATGCCACAACAGAAGGCTACGGATTCAAGGTTCGAGACCTTGGGAAATTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGCGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCCTAGAATTCCAGAAGCACAGTTGCCTTCACTTTCGCGAGTCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCAGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGTAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAGGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGCTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATTGATGATCCAAGTAGTTTGGCAGGACAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCTAAGAAGTGGATTCTGTAGTAAAGCTGGGGCATCAAATTAA 1959 0.4206 MTENKSTSKITKKQETKKVSSFSHQPPRKQPRKGENPTRLIPPPDQSSDFGHSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGGDSCGLSCHIECALQHEKVGVIDHGQLMQLDGGYCCASCGKVTGILGCWKKQLTIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASGIQKLCSLAIEKADRWLATVPYVNPDSTEGSLPAACKFVFEEVTTSSAKIILIEMSNICSEEIKGYKLWYYKSQDESPTKDPISMFPKSQRRILVSNLKPCTEYTFRIISYTDTRDLGHSEAKCFTQSIEIVKNNPSSSVAMNKEKENLLTRGNSSVSKIGPNATTEGYGFKVRDLGKFLRLAWAQEQGYLEEFCCANVKNCCGQSEMVDKPRIPEAQLPSLSRVLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLVRSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRIASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEAHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRLRSGFCSKAGASN 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00382 652 ProSiteProfiles Fibronectin type-III domain profile. 258 357 IPR003961 GO:0005515
Gma08g00382 652 MobiDBLite consensus disorder prediction 1 19 - -
Gma08g00382 652 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 647 IPR044514 GO:0010048|GO:0040029
Gma08g00382 652 Gene3D Immunoglobulins 247 348 IPR013783 -
Gma08g00382 652 PANTHER VIN3-LIKE PROTEIN 1 4 647 - -
Gma08g00382 652 SUPERFAMILY Fibronectin type III 264 340 IPR036116 GO:0005515
Gma08g00382 652 Pfam PHD - plant homeodomain finger protein 58 177 IPR032881 -
Gma08g00382 652 Pfam Fibronectin type III domain 264 340 IPR003961 GO:0005515
Gma08g00382 652 MobiDBLite consensus disorder prediction 1 49 - -
Gma08g00382 652 CDD PHD_VIN3_plant 78 143 - -
Gma08g00382 652 CDD FN3 288 339 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00382 Gma-Chr8 3216149 3219818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00382 54 643 PHD Gene Family AT3G24440 48.007 5.08e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00382 - - gmx:100815645 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00382 08 3216149 3219818 Gma08g00382 08 3216149 3219818 ECH
Gma05g02260 05 43638153 43649106 Gma08g00382 08 3216149 3219818 GST
Gma08g00382 08 3216149 3219818 Gma07g00805 07 8592447 8600920 PCT
Gma08g00382 08 3216149 3219818 Gma09g01741 09 42993383 42995881 PCT
Gma07g00805 07 8592447 8600920 Gma08g00382 08 3216149 3219818 PCT
Gma09g01741 09 42993383 42995881 Gma08g00382 08 3216149 3219818 PCT