Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00358 ATGGATCCTCCACCGAAGAGCTGGAGCATCCACACCCGATCCGAGATCATAGCAAAATACGAGGTCATGGAGCGGGTCGGGTCGGGAGCATACGCCGATGTGTACCGCGGCCGCCGCCTCTCCGACAACCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAGTCCGCCTTCCGAGAAATCGACGCTTTGCAGCTCCTGCAGGGCTCCCCAAACGTCGTCGTTTTGCACGAGTACTTCTGGCGCGAAGACGAGGACGCCGTCCTTGTCCTCGAGTTCCTCAGAACCGACTTGGCCACCGTCGTCGCCGACGCCGCTAAGGCCAACCAGCCCCTCCCCGCCGGCGAGCTCAAGCGCTGGATGATTCAGATTCTCTCCGGCCTCGACGCTTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAATCTCTTAATTTCCGAACTCGGCCTCCTCAAGATCGCTGATTTTGGACAGGCAAGGATTCTCACGGAGCCTGGTATTGATGCTTCTAATAATCATGAAGAATATTCTAGGGTTTTAGATGACGCTGACAATAAGGATACTATTACTAGCACTCACGATGGGAAAGCAACATGCACCACAAGTGGCGTagatagggaagaggaagagaaagaacttggttgtttgacgtcatgcgtggggactcgttggtttagggctcctgagttgctttatggatccagagactatggtttggaggttgatttgtggtccttgggatgtatctttgcagaacttttaactctgcaacctttgtttcctggaactgctgatattgaccagcttagtagaatcattggtgttttgggtagccttgatgagagtgcttgggctggttgttctaaacttcctgattatgcgataatctcctttagcaaggtggagaatcctgctggtcttgaagcttgtttgcccaatcggtcccctgatgaagtggctctggtgaaaaaactggtttgttatgatcctgctaagagggccacggcgatggagctgcttcatgacaagtactttagtgaagagcctcttcctgttccggtttctgagctgcgagttcctatgaccagaaaagggcaagatgaggattccccttgtgggtggggtgatatcgatgaaatggattgcgattctgattttgatgagtttggccctctgaatatcacaaggactggaactggtttctccatacagtttccttga 1230 0.2821 MDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDNLTVALKEIHDYQSAFREIDALQLLQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVVADAAKANQPLPAGELKRWMIQILSGLDACHRHMVLHRDLKPSNLLISELGLLKIADFGQARILTEPGIDASNNHEEYSRVLDDADNKDTITSTHDGKATCTTSGVDREEEEKELGCLTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIIGVLGSLDESAWAGCSKLPDYAIISFSKVENPAGLEACLPNRSPDEVALVKKLVCYDPAKRATAMELLHDKYFSEEPLPVPVSELRVPMTRKGQDEDSPCGWGDIDEMDCDSDFDEFGPLNITRTGTGFSIQFP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00358 409 PANTHER CYCLIN-DEPENDENT KINASE 10 12 364 - -
Gma08g00358 409 SMART serkin_6 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00358 409 Gene3D Transferase(Phosphotransferase) domain 1 106 359 - -
Gma08g00358 409 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00358 409 Pfam Protein kinase domain 214 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00358 409 SUPERFAMILY Protein kinase-like (PK-like) 13 354 IPR011009 -
Gma08g00358 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Gma08g00358 409 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gma08g00358 409 PANTHER CELL DIVISION PROTEIN KINASE 12 364 - -
Gma08g00358 409 ProSiteProfiles Protein kinase domain profile. 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00358 409 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00358 Gma-Chr8 3012756 3014553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00358 4 409 Core Cell Cycle Gene Families AT4G28980 57.263 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gma08g00358 Pkinase 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00358 - - gmx:100801952 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00358 08 3012756 3014553 Gma08g00358 08 3012756 3014553 ECH
Gma05g02234 05 43420349 43422876 Gma08g00358 08 3012756 3014553 GST
Gma08g00358 08 3012756 3014553 Gma07g00761 07 8054681 8058012 PCT
Gma08g00358 08 3012756 3014553 Gma09g01785 09 43463425 43465315 PCT
Gma07g00761 07 8054681 8058012 Gma08g00358 08 3012756 3014553 PCT
Gma09g01785 09 43463425 43465315 Gma08g00358 08 3012756 3014553 PCT