Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00355 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGCAACAAATGATGGCCAGAAACCCTAACAACTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTTCTCAAGCTTCTGCACCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCTTATAACCCCACTTCTCTTCCTCTTCCTTCTTGGCATGACAACAATCAAGAGCTACCCGAGTCATGGAGCCAGCTACTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGGTATGTGCCAGATTCAGTCAAAGAAGTTGGAGAACTGGGAGCAACAAATGCTAAGCCAGGCTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGTGTATGGGCATGGAACAAACGAAGAGTTTCAAGCAGCAAAGCCAATTACATGGTCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCCAACAATAACGCCGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGTAATAGCAGTACTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGactgacacggcttctgtcttattagaagctattgggtatatcagattccttcagagtcaaattgaggtcattaatgtttattctcctcgctctgtcgatttttgcaaacaaccacgagagtcagtgaatagtgatggcacgctagatGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATCCGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTAGTGAGCAGGATTCTCAAGAAGAAGCAAAGAAAGACCTGAGGAGTAGAGGGTTGTGCCTGGTTCCAGTGTCATGTACGCTCCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCTCCTGCTTTTGGTGGGGGATTTCGGTAG 1125 0.4151 MNRGVLQSSPVQQMMARNPNNWWNINTMRPPPPSQASAPFFSTPSNFLTPYNPTSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGGMCQIQSKKLENWEQQMLSQAPSAPIVDVKQESSVNSYVYGHGTNEEFQAAKPITWSQIVPASSPKSCVTSFSSSMLDFSNNNADARPPPPDPSSECNSSTATGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEVINVYSPRSVDFCKQPRESVNSDGTLDALSLPYLGSGSGNMRHQQSVQGEKNCIFPEDPGQLLNENCLKRKAASSEQDSQEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00355 374 PANTHER OS05G0228400 PROTEIN 17 360 - -
Gma08g00355 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 255 IPR036638 GO:0046983
Gma08g00355 374 MobiDBLite consensus disorder prediction 171 206 - -
Gma08g00355 374 Gene3D - 207 259 IPR036638 GO:0046983
Gma08g00355 374 Coils Coil 323 343 - -
Gma08g00355 374 MobiDBLite consensus disorder prediction 183 206 - -
Gma08g00355 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Gma08g00355 374 CDD bHLH_AtbHLH_like 207 254 IPR045239 -
Gma08g00355 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00355 Gma-Chr8 2983600 2987387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00355 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.264 6.66e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00355 - - gsj:114421158 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00355 08 2983600 2987387 Gma08g00355 08 2983600 2987387 ECH
Gma05g02230 05 43376736 43380838 Gma08g00355 08 2983600 2987387 GST
Gma08g00355 08 2983600 2987387 Gma07g00756 07 7998999 8003390 PCT
Gma07g00756 07 7998999 8003390 Gma08g00355 08 2983600 2987387 PCT