Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00351 ATGTCTGAGGCATTGGAAGAGGTTGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGGGTTGAACCTGGAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGAGGATCTGAAAAAGATGCCGCTGCCTTGTTTTCTCCAACTTCAAGGGGTGCTGTTAGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTACATGAGAATAAGCCCCAGATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGCTGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATATTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCATATGGGGTTTCTAGTCGGGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCTACTAG 885 0.4678 MSEALEEVVPSMKGGCEEEGLNLEATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGNWNGGGSEKDAAALFSPTSRGAVSVSVSAAKSLTLTATDCTNQPTALGASVLKETVPHSPKPLHENKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDAAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00351 294 ProSiteProfiles PB1 domain profile. 174 276 IPR000270 GO:0005515
Gma08g00351 294 Pfam AUX/IAA family 26 285 IPR033389 -
Gma08g00351 294 Gene3D - 168 288 - -
Gma08g00351 294 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 287 IPR003311 GO:0005634|GO:0006355
Gma08g00351 294 SUPERFAMILY CAD & PB1 domains 172 275 - -
Gma08g00351 294 PANTHER AUXIN-INDUCED PROTEIN 2 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00351 Gma-Chr8 2931972 2934900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00351 178 284 B3 DNA Binding Superfamily AT4G23980 29.907 1.32e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma08g00351 AUX_IAA 1.1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00351 K14484 - gmx:100795749 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00351 08 2931972 2934900 Gma08g00351 08 2931972 2934900 ECH
Gma05g02228 05 43334679 43337147 Gma08g00351 08 2931972 2934900 GST
Gma08g00351 08 2931972 2934900 Gma09g01789 09 43502168 43505476 PCT
Gma09g01789 09 43502168 43505476 Gma08g00351 08 2931972 2934900 PCT