Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00345 ATGGAACGCATCGTTGGCGGCAAGTACAAGCTCGGGCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGTAAAACAAAACATCCCCAACTGCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCTAACATAAAATGGTCCGGCATAGATGGGGAGGATAATGTGCTTGTTATTGACTTGCTTGGGCCGAGTCTTGAGGATCTCTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTATTATTGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACACAGGGATATTAAACCGGATAACTTTCTCATGGGACTTGGTCGAAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATTCCACTACTAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGTACTGCTCGATATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTAAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACAAAGAAACAAAAGTATGATAAAATATGCCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCCTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTATTTCGGGACCTATTTGCTCGAGAAGGTTATGATTTTGATTATGTATTTGATTGGACCATTTTGAAGTACCAGCAATCTCAAAAGAATGTAATGCTCCCTCCATTATCTCCAGTTCCAGGAGCAAGTAACAGTCGTGCAACTCCAATCGATGTTGACAGCCATCAAGGGCATGTTAAAGAGCGTATTAGAGCTGGTGATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTGGGTAAAAATTTGAGTTATGAGAATCCACTTGACAAAAATATTTTTGGAGAAGCAAATATACCCTCTACTTCATTTTCTCCTGCTAGTACTTCAAAAAGGAACTCCTTAAAGCAATCCTTCGCATGTCTTCTGCtaaatgattgccaaatatgCTATGAAGCTTTGAAGAAGATTCTGTGCATCTTTTCCCAAAGTTGTTGCTTCTTTCCTGAGGTGACTACAAATGATTGTGCGGTTATTATCGAAAGTATCACTGAAATAATGGTCTCTTATGAGTTATCAAAGGTTTTCCACTATTCTCTATCCACATACTAA 1371 0.3997 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEDNVLVIDLLGPSLEDLFVYCGRKFSLKTVLLLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQSQKNVMLPPLSPVPGASNSRATPIDVDSHQGHVKERIRAGDATGSGVKIQFKSPVGKNLSYENPLDKNIFGEANIPSTSFSPASTSKRNSLKQSFACLLLNDCQICYEALKKILCIFSQSCCFFPEVTTNDCAVIIESITEIMVSYELSKVFHYSLSTY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00345 456 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00345 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma08g00345 456 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gma08g00345 456 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00345 456 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 390 - -
Gma08g00345 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma08g00345 456 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Gma08g00345 456 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00345 456 PANTHER CASEIN KINASE-RELATED 1 390 - -
Gma08g00345 456 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00345 Gma-Chr8 2889905 2894620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00345 9 234 EF-hand Containing Proteins AT4G23650 28.879 4.50e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma08g00345 Pkinase 1.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00345 K08960 - gmx:100800342 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00345 08 2889905 2894620 Gma08g00345 08 2889905 2894620 ECH
Gma05g02224 05 43299214 43307271 Gma08g00345 08 2889905 2894620 GST
Gma08g00345 08 2889905 2894620 Gma09g01796 09 43563736 43567804 PCT
Gma09g01796 09 43563736 43567804 Gma08g00345 08 2889905 2894620 PCT