Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00325 ATGGATAACGACAACGTCAACCTTACAATTTCAGAGAGCAACAATATTGCGCAGTCAACAATGTCCAACAATTTCATAGATTTGGATGTTTTCGATCTAGACGAGGCTCTTGCGGTGGCGGTGGTGGACGGAGAACCACGGCGTCTATTCGCAACGTGGAAGACCTTCGTGTCGAACTTGCCTACGGTTAACGACGTGACGAGGGATGATGTTTGCTCTGTTTGCATGGAAGGGTTTATTACCCAGCGCAACACGGATGGGGAAAACAAACGAGTCCCGTGCGGCCACGTGTACCACTCAAACTGCATCACCCTCTGGTTGGAGCACTGCAACTCTTGCCCGCTTTGCCGCTGCCATATCCCCCTTTTCTAG 372 0.5081 MDNDNVNLTISESNNIAQSTMSNNFIDLDVFDLDEALAVAVVDGEPRRLFATWKTFVSNLPTVNDVTRDDVCSVCMEGFITQRNTDGENKRVPCGHVYHSNCITLWLEHCNSCPLCRCHIPLF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00325 123 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 24 120 - -
Gma08g00325 123 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 24 120 - -
Gma08g00325 123 Pfam Ring finger domain 71 117 IPR001841 -
Gma08g00325 123 ProSiteProfiles Zinc finger RING-type profile. 72 117 IPR001841 -
Gma08g00325 123 SMART ring_2 72 116 IPR001841 -
Gma08g00325 123 SUPERFAMILY RING/U-box 65 121 - -
Gma08g00325 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00325 Gma-Chr8 2770910 2771450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00325 71 121 C3H Transcription Factor Family AT3G60080 49.020 6.55e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00325 - K22378 gmx:102669154 265.003