Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00315 ATGTCAAATTTGCATTTTATTTTCTATGGTTTAGTAGTTATTCTTTTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCGGCCTAAGCCAGGGAATGGTTTATCCACCAACATGACCAGAGTCGAATTTTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATGGTAAGGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTGCATGCAGGGGTTTACACGGAGAAAGTTAATATTTCTCCTTTCAAATCCTTCGTAACAATACAAGGAGAAGGTGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATAGCCAAGAACATCACATTCAAAAACACTGCCCCAATTCCAGCACCAGGAGCAGTTGGAAAGCAGGGAGTGGCATTGAGAATTTCAGCAGACACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATATTGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCCTTAACAGCGCAAGGAAGGAACAGTTTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCAGTGACGAGGAAGCTAAGCCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTCTCTCTTTGA 1128 0.4344 MSNLHFIFYGLVVILFLQNPSATQCHTKGIRPKPGNGLSTNMTRVEFSEQQFMKWVKFVGGLKHSVFRTAKNKLFPSHTLHVSKKHGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNISPFKSFVTIQGEGADKTIVQWGDTAQSQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADTAVFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELSDEEAKPFISLSYIDGSEWINLSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00315 375 Gene3D - 77 374 IPR012334 -
Gma08g00315 375 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Gma08g00315 375 PANTHER PECTINESTERASE 1 374 - -
Gma08g00315 375 Pfam Pectinesterase 84 367 IPR000070 GO:0030599|GO:0042545
Gma08g00315 375 SUPERFAMILY Pectin lyase-like 76 373 IPR011050 -
Gma08g00315 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00315 Gma-Chr8 2687478 2690874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00315 85 374 Carbohydrate Esterase AT1G05310 47.651 2.45e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00315 K01051 - gmx:100802832 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00315 08 2687478 2690874 Gma08g00315 08 2687478 2690874 ECH
Gma05g02200 05 43106752 43110036 Gma08g00315 08 2687478 2690874 GST