Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00306 ATGGAGAACACCTGGATCCTGACTTTTCACCTTCTCCTCCTCCTGCTCCATCCAAATGCAGCAAAAGGGGCCATTGGTGTTGGTGTTGGTGTTGGTGGCAGAGGTGGCATAGGTGTTGGCATTGGCATTGGGGGCAGTGTTAACACCCCAGGGCCCTCTGGATCAAACCTCAAGAGTGCCTTCACAGCACTCCAGGCATGGAAATCTGCCATGACCGATGACCCATTGAAGATTCTGGATACTTGGGTTGGTCCCAATGTGTGTTCCTACAGAGGTGTCTTCTGTGCAAACTCTCAGGATGATAATGGAATTGTCACAACAGCAGCAACTGAGTCTTCTATTGTTGCAGGAATAGATCTCAACCATGCAAACCTCCAAGGGACCCTTGTCAAAGATCTCTCTTTGCTCTCTGACATCACTCTTTTCCATCTCAACAGTAACAGGTTTTCTGGCTCACTCCCTGACACATTCAGGGACCTCACTTCACTCCAAGAGTTGGACCTCAGCAACAACCAGCTCTCAGGCCCTTTCCCCATGGTCACTCTCTCCATGCCAAGCCTCATCTACTTGGACCTCAGATTCAACAACTTCTCAGGCCAACTTCCTGATCAACTCTTCAACAAGAAACTTGATGCTATATTCCTCAACAACAACAACTTTGGAGGTGAAATTCCAGACAGTTTGGGAAATTCACCTGCCTCAGTCATCAACTTGGCCAACAACAAGTTGAGTGGAAGCATCCCTTTCAGCTTTGGCTTCATGGGTTCAGGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCACAAGGAGTAGGGATCTTCACTGAGATGCAAGTTTTTGATGTGAGCTTCAACTCACTCATGGGCCATTTGCCTGACACTATGAGTTGCTTGCAAGACATAGAGGTTCTTAATTTGGCACATAACAAGCTTTCTGGGGAGTTATCCGATGTGGTATGCTCTTTGAGAAGCCTATTAAATCTAACTGTTGCTTACAACTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAGTGTGGGGTTTGATTTCTCGGATAATTGTATTCCTGGAAGGGATATGCAAAGACCCCAACCGGACTGCTCTATAATCCCTGGTGGTAGTCTCAATTGTCTTAGAATTCCTACTCCAAAACCTCTTGTTTGCGCTGCTCTGGCTGCAACTTTGTCTAAGCACACAAATTCACGTTCCTTTTCTCCCTGA 1242 0.4662 MENTWILTFHLLLLLLHPNAAKGAIGVGVGVGGRGGIGVGIGIGGSVNTPGPSGSNLKSAFTALQAWKSAMTDDPLKILDTWVGPNVCSYRGVFCANSQDDNGIVTTAATESSIVAGIDLNHANLQGTLVKDLSLLSDITLFHLNSNRFSGSLPDTFRDLTSLQELDLSNNQLSGPFPMVTLSMPSLIYLDLRFNNFSGQLPDQLFNKKLDAIFLNNNNFGGEIPDSLGNSPASVINLANNKLSGSIPFSFGFMGSGLKEILFLNNQLTGCIPQGVGIFTEMQVFDVSFNSLMGHLPDTMSCLQDIEVLNLAHNKLSGELSDVVCSLRSLLNLTVAYNFFSGLSQECSRLFSVGFDFSDNCIPGRDMQRPQPDCSIIPGGSLNCLRIPTPKPLVCAALAATLSKHTNSRSFSP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00306 413 Gene3D Ribonuclease Inhibitor 59 232 IPR032675 -
Gma08g00306 413 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 413 - -
Gma08g00306 413 Pfam Leucine rich repeat 142 197 IPR001611 GO:0005515
Gma08g00306 413 PRINTS Leucine-rich repeat signature 163 176 - -
Gma08g00306 413 PRINTS Leucine-rich repeat signature 303 316 - -
Gma08g00306 413 SMART LRR_typ_2 136 159 IPR003591 -
Gma08g00306 413 SMART LRR_typ_2 327 350 IPR003591 -
Gma08g00306 413 SMART LRR_typ_2 160 183 IPR003591 -
Gma08g00306 413 SMART LRR_typ_2 184 208 IPR003591 -
Gma08g00306 413 SUPERFAMILY L domain-like 87 351 - -
Gma08g00306 413 Gene3D Ribonuclease Inhibitor 233 369 IPR032675 -
Gma08g00306 413 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Gma08g00306 413 PANTHER LRR/EXTENSIN 1 413 - -
Gma08g00306 413 Pfam Leucine rich repeat N-terminal domain 59 95 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00306 Gma-Chr8 2630522 2632010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00306 50 384 Leucine-rich Repeat extension Gene Families AT3G22800 49.405 1.43e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00306 - - gmx:100820611 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00306 08 2630522 2632010 Gma08g00306 08 2630522 2632010 ECH
Gma05g02193 05 43058678 43060445 Gma08g00306 08 2630522 2632010 GST