Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00299 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGACGCCGGAGATCTTCTCACCGTACACCGGCAATGCCGATTACTCTCCGTACTCATTGCAAGAAGCACTGAGTGCGCTTCAGCACTACGAATCCACCGATGCTGAGTCAGACTCGGAGTTTCCGTCTCGGGAACCGGAAGTCCCGGTGGACGCTTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGGGAGAAGGCTCGCCGCCGTGATCCCCGGAAGTACCATTACTCCGGCACGGCGTGCCCCGATTTCCGCAAGGGGAGTTGCAAGAAGGGTGACGCGTGCGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCCGCACGTTACCGTACTCAGCCCTGCAAGGACGGCACCAGTTGTCGCCGGCGCGTGTGTTTCTTCGCGCACACGCCGGAGCAACTCAGGGTGTTGCCACAGCAGAGTCCGCGGAGTGCTGATTCATACGACGGGTCTCCTTTGAGGCATGCAATTGAGTCTTCGTGCGCCAAGACTCTGGCACCGGCACCGTTTGTGTCTTCTCCTGGGTCGGTGTCGCCGCCTCTGGAGTCTCCGCCGATGTCGCCGATGACTGTGAGTGTTAATGAGATGGTGGCGTCTTTAAGGAACTTGCAACTGGGGAAGGTGAAGTCTTTGCCTTCTTCTTGGAATGTCATGGGGCCTTCCGGGTTCGGATCTCCGAGAGGACCCATGATCCGACCCGGATTCTTCAGCCTTCCGACAACCCCGACCCAGGCACCGACTCGCGGTGGGGTCAACTACTTTGACAAGTGGGATCAGAGTTGCGAGGAGGAGCCTGTTATGGAGAGGGTGGAGTCTGGACGAAACATAAGGGCGAGGATGTTTGCAAAATTGAGCAAAGAGAATCATCTGGACGGGTCGGATTCTGGATCGGGTCAAATTGGGGATCCGGATGTTGGATGGGTTTCGGAGCTTGTCAGTCGCTGA 1068 0.5833 MMLGETHRANPTVHVPPWTPEIFSPYTGNADYSPYSLQEALSALQHYESTDAESDSEFPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSCAKTLAPAPFVSSPGSVSPPLESPPMSPMTVSVNEMVASLRNLQLGKVKSLPSSWNVMGPSGFGSPRGPMIRPGFFSLPTTPTQAPTRGGVNYFDKWDQSCEEEPVMERVESGRNIRARMFAKLSKENHLDGSDSGSGQIGDPDVGWVSELVSR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00299 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Gma08g00299 355 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Gma08g00299 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 353 - -
Gma08g00299 355 PANTHER UNKEMPT FAMILY MEMBER 7 353 IPR045234 -
Gma08g00299 355 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Gma08g00299 355 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Gma08g00299 355 Gene3D - 115 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00299 Gma-Chr8 2535363 2536860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00299 54 229 C2H2 Transcription Factor Family AT5G12850 54.255 2.52e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g00299 zf-CCCH 7.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00299 - - gmx:100808676 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00299 08 2535363 2536860 Gma08g00299 08 2535363 2536860 ECH
Gma05g02186 05 42974834 42976248 Gma08g00299 08 2535363 2536860 GST