Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00236 ATGGGTGTTCCACAACCTCCACCTCCCTCTCAACATCTCTATCCACAAGAAATTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATCATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACATACTTCCCAGTACTTCTACTGATCCACAAACTGCATATCCTTATTCTACACAACCTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTAAGAACAAGAGATTCAGTATGTTGTGTTTGCCTAGGAGAATTTGAGCTGAATGAAGAGTTGCTACAGATTCCTTATTGCAACCATGTGTTTCATATAAGCTGCATATGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGCTCCATCATTCCCTCTTCCAAGTTCCTTAATCCAGCACCACCTATTATTATATCAGACCCACCACAGCAAGGTGGAATTTCAGGCTCTTCATCACACATCATGTCATTGCCTCATCAACAAGAAGAAGAAGTTGGTGCTTCCACAAATACTACCATTTTTCAAGGGAATGATGTATAA 630 0.4016 MGVPQPPPPSQHLYPQEIQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPSTSTDPQTAYPYSTQPCRLDLTVQFLDKLPRILFDEDLRTRDSVCCVCLGEFELNEELLQIPYCNHVFHISCICNWLQSNSTCPLCRCSIIPSSKFLNPAPPIIISDPPQQGGISGSSSHIMSLPHQQEEEVGASTNTTIFQGNDV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00236 209 SUPERFAMILY RING/U-box 86 157 - -
Gma08g00236 209 SMART ring_2 108 149 IPR001841 -
Gma08g00236 209 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 166 - -
Gma08g00236 209 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gma08g00236 209 Pfam Ring finger domain 108 150 IPR001841 -
Gma08g00236 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Gma08g00236 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 11 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00236 Gma-Chr8 2000754 2002303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00236 3 196 C3H Transcription Factor Family AT4G10150 34.951 2.25e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00236 K19039 - gmx:100806554 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00236 08 2000754 2002303 Gma08g00236 08 2000754 2002303 ECH
Gma05g02129 05 42474790 42476477 Gma08g00236 08 2000754 2002303 GST