Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00230 ATGACAATATCTGTTTTCTTAGTTCCTTCGACGCCTCAGTTGTGTAACTACAGAATCTCATGGCCAATTCCCACTTACCCTTCTCTTTCTTCTTCTAAGTTAACTGTTTCACTGTGCTCTCCTTCCCCTCCAACATCTGTTATCGAAGAGGGTCCTTCTCCTTCACCAGAATTGACCAGTGGTTGTAAGGCGTGTGGAAGAGAAGAAGTGGAGCAAGGATGCAATGGTGAAGGAAGGATTCAGGGTGGGATTGCTACAGTACCAGGCTTTGGGTGGTGGCCTATAAAGGCTTACAGGCCATGCCCTGCATTTGTGGCATCTGGTGGTAGGTATAGGCGCCAAGGACAAAGCATGGACGAGGTTGTCTCCGGAAGTGGTAAAACTAAAACACCCATTGCCACTGACTCCAACACAAGTAACAAAAAGGAAAGTTCGAAGAAATCTAAGAGGATTATGGAAATCTATGAAAAAAATTTAGATCCGCCCAGTGACATTCCCGTTTTCGGCTCTCTCCGAAATTTCTTAGATTGCTTCTGTGTCAGAGAAATCAGTGCAACAAAAATGGACGACACCGAAACCAAAGGAAGAATCGAAGAGACTGTGCGTAGGATTTTGCAAGAATCGGACATGGACGAGGTTACTGAGTCTAAGATTCGAAAACAGGCCTCCGAACACCTTGGCCTCGACCTGTCTCAGCCTTATTTCAAAGCCTTTGTCAAACAGGTCGTGAAGGCTTTTCTCCAAGAAGAAGAACAACGACAGAAACAACAACAACAAGATGAAGATGAAGAAGAAGAACTAGGAGGAGCTTCCAAGGGCAAGGAGTACGATGATGAAGGCGATCTCATCATCTGCAGGCTTTCAGATAAGAGAAGGGTGACGATTCAGGATTTCAGAGGGAAAACATTGGTCTCCATTCGGGAGTATTATAAAAAGGATGGCAAGGAACTTCCTACTTCCAAAGGAATAAGTTTGACAGAAGAGCAGTGGTCAGCCTTTAAGAAAAATGTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAGTCAAGTTGA 1053 0.4444 MTISVFLVPSTPQLCNYRISWPIPTYPSLSSSKLTVSLCSPSPPTSVIEEGPSPSPELTSGCKACGREEVEQGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTKTPIATDSNTSNKKESSKKSKRIMEIYEKNLDPPSDIPVFGSLRNFLDCFCVREISATKMDDTETKGRIEETVRRILQESDMDEVTESKIRKQASEHLGLDLSQPYFKAFVKQVVKAFLQEEEQRQKQQQQDEDEEEELGGASKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMESS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00230 350 SUPERFAMILY ssDNA-binding transcriptional regulator domain 284 346 IPR009044 GO:0003677|GO:0006355
Gma08g00230 350 Gene3D - 184 250 - -
Gma08g00230 350 Pfam DEK C terminal domain 193 247 IPR014876 -
Gma08g00230 350 Gene3D Transcriptional Coactivator Pc4; Chain A 273 350 IPR009044 GO:0003677|GO:0006355
Gma08g00230 350 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 191 349 - -
Gma08g00230 350 MobiDBLite consensus disorder prediction 118 139 - -
Gma08g00230 350 MobiDBLite consensus disorder prediction 251 275 - -
Gma08g00230 350 Pfam Transcriptional Coactivator p15 (PC4) 285 336 IPR003173 GO:0003677|GO:0006355
Gma08g00230 350 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 191 349 IPR045125 GO:0003713|GO:0060261
Gma08g00230 350 Coils Coil 244 267 - -
Gma08g00230 350 MobiDBLite consensus disorder prediction 112 148 - -
Gma08g00230 350 SUPERFAMILY DEK C-terminal domain 186 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00230 Gma-Chr8 1967171 1973351 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gma08g00230 DEK_C 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00230 K25815 - gmx:100788535 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00230 08 1967171 1973351 Gma08g00230 08 1967171 1973351 ECH