Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00227 ATGGAGGCGGATTTCGTCACGAATGATATGCTCACACTCACGCAGGACGCTTTTTATGCCAACGATAATGATGATGCAGCTGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGACTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGTAATGGTTTGGCTACTATTGAAGGAGATTCTGATCTCGACACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCGGACAGTACATGGTTATGCCCCAGATGTGTTGTTGATGAAGTTTCTAAAGGAACATCCAATTCAGTAGAGAGGACAACCGTGGAATGTAATGCAGATAATCATAATAGTAATAGTGACTGTCATGCTGAGGATTCCTTTTCAGGAAAAGTTTCTGTGTCTGTTGCTGATACAGGAGAGACGGCTGTTGTTGTTTCGATGGTTGACCAAACAAAATGGGTTCCATCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGAGGACCCAATGACTGAATCATGTATTTTAATGTCCGTCACAAGTGATCAGCAAAGTGGGGAAGTGAAGACAGAGACAAATACATTACCAGTCATGGAGGAAGAACTGGAACTGTCTTTGTCAAACAACATATCCTGTAGCGTAACTTCTAAATCCTCAGTGCATAATGATTTAAAGAAAAATGTCAGTGGAGCAAGGGATGAACCAAGTGGCTTTGATGGAACCAAGTTATTTGACAAGTCCCTTACCAAAACTAGTCCATCCAGAATTGAATCCGAAATGGGTCTTCAACTTGGTTTGTCAGTAGGCTCTTTCTTATCTGTTGGTAATGCAGACAAGAATGAAACAAGAGATCAAGCAACTGATGTCCTGTACTCGAGTTCAGAAGAATGTTTTTTGAAAGGAGATGAAATCGAAGCCAATGCTTGTAAGGACAGTGCCAAAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACTGTAATGAGCAAGTTTATATAAAAGATGATGATGGAAATGTCAAGCCTGAACTTCCGGATGAAGTTGCACAAAAGAAAATTAGAGCTACTGGTAGTCAAATGACCAGTAGTAATGACTCAGCTGGTGCTCATCTTTTAGAAAATGCTCAGAAATGCCCTGCTTTAAAGCAGTCTCCAACAAATTCGATTGTCAAATCAGATATAATGAATATAGTTAAAGGGACAAACCGGAGGCACTCCAAGGAACATACTGACACTAATGCTTGTGACAAGTTATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGGGTCTCTGATGATGGAGAATCATCTTTGGTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAGTCCTCTATAAACTTTGAGGATAACCATTTTGATCCCAAACTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCcctgcagctataaaggcaaagaaatcaatgttgcagaaaggaaaagtgcgtgaaaatctaacaaagaaaatttttgggacatccaatggaagaagaaagcgTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTGAGAAAAGGTTCAAACAATCCAGTATCAAAGCAGGCTTCTGAATGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAAAAGATGTCAAACCACTCTCTGTGCTTAAAACCATTGCTAACTCGGAGCAAACTAAACATAGCCTGTCAGAAAAAGTACCAAATCTATCGGTTGATAACAATACTATTAAAGCAACTGATATAAATAATCTTTTATCAAAGAACAGTGTTTGTTCATCTGAAAAAAAAGTAGATAAGAAGCTTGTACGTGGTCCAGTTGGTGATAGTTCAACTTCTGGTAAAGTACGTTCAGACAATCACTCAGAAAGGACATCAGTTTCATCAGCTGGTGCCAAAACTAGCACAAAAGAGTTGGACCTTAAATCTGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAAGTTCTTGCGAGGAAAACAGCTGCCACAAGTGGGAACACAGCAAATGGAAATCAGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTGTTCTTGCCCAATTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCACCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCATATTGAGGAACACAAATCTGGCTGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAGGAAGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTGAACCTTTGTTCACAAGAGCTCTTGCATCACACAAATAACACAAAAACCAATGTAGCCACAGACACAAGTCCACCAGCCTCTTCATCAATGCTTACTGATCAACAATCGGAACTTAATACTGATGATCTTTCAACTGACCCTGAAGTTGAAACAGCCTTGAAAAATGCCGGTCTGTTGTCTGATTCCCCACCTAGCAGTCCACACGAGAACAGAGAAACATGTAATGGTGATATGTCAGGGCCTGATAATATACTTGAACCAGATTCTCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCAAGTGTTACAAAGGTCTCATTTCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCAGACTGTGAGGGGTCTGAAAGAAATGAAGTGCCAGGAGATGCATCCTTCTCACCAAATTTTCAAGATGATGCAGTCCTTAGGGACAGGGCTTCTACAATTGATGCGGAGACGGGCCAGCCTTCTGTTTCTTCTGTGCTCCTATCCTGTGAGGGTGCTGTTGAGCCACCTGACTCAGAATTTGAAGAATTATATGGCCCAGACAAAGAACCACTTATAAAAAAAAATCCAGTTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTTCCATAATGACGAAAAACATGTCTTGGACAATGCAGTAAATGAGAATCTCACAGAAAAAGTATCTGAGGCTGGTGAAAATTTCCAAAGAAAGAAAGAGAAATCCGATGTCACTGCTAAGCAGACTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCGCTGTGCAAGAGTGGTGTAATCACAGCTGACCAATACAGGTGGGCGGTTGCAAAAACGACCGAGAAGGTTATGAAATATCATTCCAGATCAAAGAGTGCTAATTTTCTCATAAAGGAAGGCGAGAAAGTAAAGAAACTTGCAGAGCAGTATGTTGAAGCTGCCCAACAGAACAGAAAAAATTGA 3840 0.3896 MEADFVTNDMLTLTQDAFYANDNDDAAVEGERCGICMDMVIDRGLLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDEVSKGTSNSVERTTVECNADNHNSNSDCHAEDSFSGKVSVSVADTGETAVVVSMVDQTKWVPSTSEKSLLPFEVGEDPMTESCILMSVTSDQQSGEVKTETNTLPVMEEELELSLSNNISCSVTSKSSVHNDLKKNVSGARDEPSGFDGTKLFDKSLTKTSPSRIESEMGLQLGLSVGSFLSVGNADKNETRDQATDVLYSSSEECFLKGDEIEANACKDSAKVAGGKRKHADYCNEQVYIKDDDGNVKPELPDEVAQKKIRATGSQMTSSNDSAGAHLLENAQKCPALKQSPTNSIVKSDIMNIVKGTNRRHSKEHTDTNACDKLSENKGNMAGLRVKKIMKRVSDDGESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSNNPVSKQASECQAKNPILSRLYLADTSVFPRKKDVKPLSVLKTIANSEQTKHSLSEKVPNLSVDNNTIKATDINNLLSKNSVCSSEKKVDKKLVRGPVGDSSTSGKVRSDNHSERTSVSSAGAKTSTKELDLKSGCMKSDKRKWALEVLARKTAATSGNTANGNQEDNAVFKGNYPVLAQLPIDMRPVLAPCHHNKIPISVRQTQLYRLTERILRNTNLAVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHHTNNTKTNVATDTSPPASSSMLTDQQSELNTDDLSTDPEVETALKNAGLLSDSPPSSPHENRETCNGDMSGPDNILEPDSHPDLDIYGDFEYDLEDEDYIGASVTKVSFPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGSERNEVPGDASFSPNFQDDAVLRDRASTIDAETGQPSVSSVLLSCEGAVEPPDSEFEELYGPDKEPLIKKNPVGESRSLHGDGKTETLSVANDFHNDEKHVLDNAVNENLTEKVSEAGENFQRKKEKSDVTAKQTDSVNHITKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHSRSKSANFLIKEGEKVKKLAEQYVEAAQQNRKN 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00227 1279 Coils Coil 1171 1191 - -
Gma08g00227 1279 SMART PHD_3 131 183 IPR001965 -
Gma08g00227 1279 Coils Coil 540 560 - -
Gma08g00227 1279 MobiDBLite consensus disorder prediction 748 786 - -
Gma08g00227 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 183 IPR013083 -
Gma08g00227 1279 SUPERFAMILY RING/U-box 24 78 - -
Gma08g00227 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 95 IPR013083 -
Gma08g00227 1279 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Gma08g00227 1279 SUPERFAMILY FYVE/PHD zinc finger 146 185 IPR011011 -
Gma08g00227 1279 MobiDBLite consensus disorder prediction 930 958 - -
Gma08g00227 1279 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Gma08g00227 1279 MobiDBLite consensus disorder prediction 971 987 - -
Gma08g00227 1279 MobiDBLite consensus disorder prediction 968 987 - -
Gma08g00227 1279 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gma08g00227 1279 PANTHER RING/U-BOX PROTEIN 103 1276 - -
Gma08g00227 1279 PANTHER RING FINGER PROTEIN 41, 151 103 1276 - -
Gma08g00227 1279 Pfam PHD-finger 146 183 IPR019787 -
Gma08g00227 1279 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Gma08g00227 1279 SMART ring_2 33 71 IPR001841 -
Gma08g00227 1279 SMART ring_2 123 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00227 Gma-Chr8 1930677 1941711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00227 27 75 C3H Transcription Factor Family AT2G39100 32.692 5.18e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma08g00227 PHD 4.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00227 - - gmx:100783955 2521.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00227 08 1930677 1941711 Gma08g00227 08 1930677 1941711 ECH
Gma05g02121 05 42417540 42427700 Gma08g00227 08 1930677 1941711 GST