Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00218 ATGGCTCCCTCAGCCATATTAGTATGTGGTTTTTGCATCTTCCTTTTCCATCTCCAAAGCACAAGAGGGAACAAACAGGTTAACTGCAACAGGTTGCGTTGCGGCGATATAGATATTGAGTTCCCTTTCGGTTTGAGAGGATCCAACCAAGACCGTCGCTGCAGGTATTACCCAATTCAAAGCTTCCAACTTTCGTGTCTGGACCAAACACAAACCATTCTCACCCTCCCAGGCTTCGGTAACTTAACCGTGAAAAGCATCGATTACGAAACCCAAAGCATCCGAGTCAACGACCCAGCAGGGTGTCTCCCGAAACGGTTCTTACACAAGTGGAACCTTTCGGATGATTCACCTTTTGCTTTAAACCCATTGATTTATGGAACAATTCCGTTTAACCTCACTTTCCTACGATGCCCCTCCAACGTGACGGACTCGTCTCAATTCCCGTCAGTGCCAATTTCGTGCCTGAGCGATAAAAGCAACTACTCGACCATAGTTTCGTGGTCACAACCTATTATATCATCACCCTTGTTGTCTCAACAGTGCGAGGTCATGTTTCGGGCTCTTGTCCCTCTGCCGGTGTTGGACACGCCCATGTTGCCATTTTGGCCTGATCTCAACACCGACCTTGATTTGGTGTGGACCCAACCCAATTGTAGGGACTGTTCACTTAGTGGCCAACTTTGTGGCTTCTCCAAGGACAAAACTAAAACCCCTCAAGTTCGGTGTTTCGCTAGGGACTCCACCAAAGGTCTTTCAAGAAGTGGGAAATATGGGTTAGCAATAGGAGTGGGAATACCAGGAGTCTTGTGTCTAATTGGGATTTGTTGCTGTATCGGCGGCAAGCTGAGGATGCTAAGGCATGGTGGACGCAGCACAGATGTTCCGGTGAGAAGCGTCCCTTTGGAAATGGGGCTTGACGGAGCCACAATTGAAAAGTATCCCAAAACTCTTATTGGGGAGAGTGGACGCTTATTGAAGCCCAATGACAGCACCTGCGCAATATGCCTCTGTGAATATGAGGCCAAAGAAACCTTGAGGAGCATACCCCAATGTAACCATTATTATCACGCACATTGCATAGACCACTGGCTCAAATTGAATGCCACCTGTCCCTTGTGCAGGAATTCGCCCACAGCTTCTCTTTTTTCCTTCTCTCCCACTTCCTCATTGGCCTAG 1179 0.4801 MAPSAILVCGFCIFLFHLQSTRGNKQVNCNRLRCGDIDIEFPFGLRGSNQDRRCRYYPIQSFQLSCLDQTQTILTLPGFGNLTVKSIDYETQSIRVNDPAGCLPKRFLHKWNLSDDSPFALNPLIYGTIPFNLTFLRCPSNVTDSSQFPSVPISCLSDKSNYSTIVSWSQPIISSPLLSQQCEVMFRALVPLPVLDTPMLPFWPDLNTDLDLVWTQPNCRDCSLSGQLCGFSKDKTKTPQVRCFARDSTKGLSRSGKYGLAIGVGIPGVLCLIGICCCIGGKLRMLRHGGRSTDVPVRSVPLEMGLDGATIEKYPKTLIGESGRLLKPNDSTCAICLCEYEAKETLRSIPQCNHYYHAHCIDHWLKLNATCPLCRNSPTASLFSFSPTSSLA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00218 392 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 391 - -
Gma08g00218 392 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Gma08g00218 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 391 - -
Gma08g00218 392 SUPERFAMILY RING/U-box 325 378 - -
Gma08g00218 392 CDD RING-H2_PA-TM-RING 332 375 - -
Gma08g00218 392 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Gma08g00218 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 380 IPR013083 -
Gma08g00218 392 SMART ring_2 333 374 IPR001841 -
Gma08g00218 392 Pfam Ring finger domain 332 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00218 Gma-Chr8 1874120 1876468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00218 28 379 C3H Transcription Factor Family AT2G46495 34.734 8.39e-48 164