Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00206 ATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCTAACATCATCATAGCCACACCAATTTCGCCATCATCCGAAAAGGCGGCACAAGTTGTTCCCTCAAAGAAAAAACAAGATTCAAAGAAGCAGCAATCTTTCGAAAAAGAATTGCTGGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGTCAAGGACGAGGCTCTCAAGCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAACGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCTGAATTTAAGGAAATTTCAACCATGCTAGGTGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCAGATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCTGCAACTGCATGCCAGGAGCAGAAAACCGAATAA 1437 0.4342 MGGTVVAEVPTKRGRGRRALKEKTPSTNDANIIIATPISPSSEKAAQVVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKLKEEELENRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANPEAEFKEISTMLGAKWKTVSAEEKKPYEGIYHAEKEAYLQVIAKEKRETEAMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAAHFMKEEEEQMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKDDKNSDPNRPKKPASSFILFSKEARKTLQEERPGISTSTLNALVSLKWKELSEEDRQFWNGQASKAMDAYKKELEEYNKSLAATACQEQKTE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00206 478 Coils Coil 315 392 - -
Gma08g00206 478 MobiDBLite consensus disorder prediction 133 152 - -
Gma08g00206 478 Coils Coil 446 473 - -
Gma08g00206 478 Pfam HMG (high mobility group) box 152 213 IPR009071 -
Gma08g00206 478 Pfam HMG (high mobility group) box 267 333 IPR009071 -
Gma08g00206 478 Pfam HMG (high mobility group) box 396 464 IPR009071 -
Gma08g00206 478 CDD HMG-box 396 461 - -
Gma08g00206 478 Coils Coil 60 122 - -
Gma08g00206 478 MobiDBLite consensus disorder prediction 364 409 - -
Gma08g00206 478 MobiDBLite consensus disorder prediction 247 268 - -
Gma08g00206 478 MobiDBLite consensus disorder prediction 364 395 - -
Gma08g00206 478 MobiDBLite consensus disorder prediction 127 156 - -
Gma08g00206 478 CDD HMGB-UBF_HMG-box 153 216 - -
Gma08g00206 478 SMART hmgende2 395 465 IPR009071 -
Gma08g00206 478 SMART hmgende2 266 334 IPR009071 -
Gma08g00206 478 SMART hmgende2 150 220 IPR009071 -
Gma08g00206 478 MobiDBLite consensus disorder prediction 49 63 - -
Gma08g00206 478 Gene3D High mobility group box domain 250 344 IPR036910 -
Gma08g00206 478 Gene3D High mobility group box domain 373 477 IPR036910 -
Gma08g00206 478 Gene3D High mobility group box domain 135 235 IPR036910 -
Gma08g00206 478 SUPERFAMILY HMG-box 139 214 IPR036910 -
Gma08g00206 478 SUPERFAMILY HMG-box 254 339 IPR036910 -
Gma08g00206 478 MobiDBLite consensus disorder prediction 25 48 - -
Gma08g00206 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 267 333 IPR009071 -
Gma08g00206 478 SUPERFAMILY HMG-box 391 468 IPR036910 -
Gma08g00206 478 CDD HMGB-UBF_HMG-box 267 330 - -
Gma08g00206 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 396 464 IPR009071 -
Gma08g00206 478 MobiDBLite consensus disorder prediction 1 63 - -
Gma08g00206 478 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 473 IPR044601 GO:0003677
Gma08g00206 478 MobiDBLite consensus disorder prediction 247 270 - -
Gma08g00206 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 151 219 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00206 Gma-Chr8 1787445 1789932 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma08g00206 HMG_box 9.4e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00206 K09273 - gmx:100783033 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00206 08 1787445 1789932 Gma08g00206 08 1787445 1789932 ECH
Gma05g02099 05 42256649 42259034 Gma08g00206 08 1787445 1789932 GST