Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00198 ATGGCTTCATCTTCCATCAAACACACTCACCACCTTAACCGCACAAAACTCTTCATGAAAGAAGAAACCCTTTTGAAAAAGAAGCATCACTATCCCAAAATCATACGAATACGTGTCACCGACGCCGACGCTACCGACTCCTCCAGCGACGACGACGAGCCCTCCATGTCCTCCACGCGCCGCAGAGTAAAAAACTTCGTCAACGAAATTACCATCCAAGGCGGCGGCGGTGGTGGTGGCGACGTTAACGTTGTTTCTAAGAAAAGAAGATTCAAGTCCGGTGCCGGAGCTCCGTTATGTCGGCGGAAGACGGGGGCGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGAGACCCGTCGCGCCGCGTCCGGCTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCTGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGCCGGAGAACAGAAAAACCGGTTACTGCTCCGGCGAGGAGTCTCGCAACAACGACGACTTGCGTTCCCCCACTTCGGTTCTTGGGCGCTGTTCGGTGTCCGAGGAAGCTGTAACTGCAAACGACGTATTTGGAGGCTCTAGTGAGTGCGAGTATTCATGCGTTTCGGAGTCAGTGTTTCCTATTCCTAACGAGGTGGTGTTTGACTTTGAAAGCACGTTAGATATGTTTGATGAAGGGATTAATAATGTTGTGGCAGAGACTAGTATATTCTTGGCGGAGGATTTAGATTTGGGTTTTACGAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 882 0.5272 MASSSIKHTHHLNRTKLFMKEETLLKKKHHYPKIIRIRVTDADATDSSSDDDEPSMSSTRRRVKNFVNEITIQGGGGGGGDVNVVSKKRRFKSGAGAPLCRRKTGAKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPPENRKTGYCSGEESRNNDDLRSPTSVLGRCSVSEEAVTANDVFGGSSECEYSCVSESVFPIPNEVVFDFESTLDMFDEGINNVVAETSIFLAEDLDLGFTSWHRECDNFQDIGGDLFVWDPLVAL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00198 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 289 - -
Gma08g00198 293 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Gma08g00198 293 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Gma08g00198 293 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Gma08g00198 293 MobiDBLite consensus disorder prediction 42 62 - -
Gma08g00198 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00198 Gma-Chr8 1733118 1734352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00198 1 293 AP2-EREBP Transcription Factor Family AT4G23750 42.000 3.12e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma08g00198 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00198 - - gmx:100776453 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00198 08 1733118 1734352 Gma08g00198 08 1733118 1734352 ECH
Gma05g02090 05 42194639 42195643 Gma08g00198 08 1733118 1734352 GST
Gma01g02243 01 57609656 57610552 Gma08g00198 08 1733118 1734352 PCT
Gma11g00173 11 1340378 1341568 Gma08g00198 08 1733118 1734352 PCT