Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00186 ATGGGCAACTGCAGCGGCGGCGGCGGAATCGGCAGCACCACCTACTCCGACGACCATCCCCGCCGCAACGGCATCACCGTCCTCCCTCCGAACTCGAACCTTTCAGCCCCACCAGCGACCTCCTCGCTGGGCCGGCGCATGGAGGACATGCGATCCATTTACATATTCGGGCGGGAGCTGGGGCGCGGGCAGTTCGGCGTGACGTACCTGGTTACCCACAAGGCCACGAAGGAGCAGTTCGCGTGCAAGTCAATCGCCACGCGGAAGCTGGTGAACCGCGACGACATCGACGACATCCGGCGCgaggtgcagatcatgcaccacctcaccggccaccgcaacatcgtcgagctcaagggcgcctacgaggaccgccactccgtcaacctcgtcatggagctctgcgccggcggcgagctcttcgaccgcatcatcaccaagagccactactccgagcgcgccgccgccaactcctgccgccagatcgtcaccgccacggattttggtctctccgtcttttttaagccagGAGATGTGTTTAGAGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGAGAAGAAGTTACGGGCCTGAAACTGATATTTGGAGTGCAGGAGTTATATTGTACATTTTGCTTTCTGGTGTTCCACCTTTTTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGTTGAAGTACTTAatcatccctggatgagagtggatggagatgcatctgataagcctcttgatattgctgttttaaccagaatgaaacatttccgggcaatgaacaagctaaaaaaagtagccctgaagGTTATTGCGGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACATTTGAAGAGTTGAAAGCTGGTCTCCCAAAATTGGGTAGTAAACTTTCTGAATCTGAAGTTAGGCAGTTGATGGAAGCGGCTGATATAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCGCCTATATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTGAGAAATATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATTCAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGATATAACTCACATAACCCATAGACGTCGCAAATAA 1428 0.355 MGNCSGGGGIGSTTYSDDHPRRNGITVLPPNSNLSAPPATSSLGRRMEDMRSIYIFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKSHYSERAAANSCRQIVTATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPETDIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLTRMKHFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADIDGNGTIDYIEFITATMHMNRMEREDRLYKAFEYFDNDKSGYITMEELESALEKYNMGDEKTIKEIIAEVDSDNDGRINYDEFVAMMRKGNPDITHITHRRRK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00186 475 Pfam EF-hand domain pair 328 388 IPR002048 GO:0005509
Gma08g00186 475 Pfam EF-hand domain pair 398 460 IPR002048 GO:0005509
Gma08g00186 475 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Gma08g00186 475 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 38 164 - -
Gma08g00186 475 SUPERFAMILY Protein kinase-like (PK-like) 54 281 IPR011009 -
Gma08g00186 475 Pfam Protein kinase domain 166 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00186 475 Pfam Protein kinase domain 56 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00186 475 CDD STKc_CAMK 54 279 - -
Gma08g00186 475 ProSitePatterns EF-hand calcium-binding domain. 336 348 IPR018247 -
Gma08g00186 475 MobiDBLite consensus disorder prediction 1 43 - -
Gma08g00186 475 Gene3D Transferase(Phosphotransferase) domain 1 45 165 - -
Gma08g00186 475 ProSiteProfiles EF-hand calcium-binding domain profile. 395 429 IPR002048 GO:0005509
Gma08g00186 475 Gene3D Transferase(Phosphotransferase) domain 1 166 288 - -
Gma08g00186 475 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Gma08g00186 475 ProSiteProfiles EF-hand calcium-binding domain profile. 323 358 IPR002048 GO:0005509
Gma08g00186 475 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 164 - -
Gma08g00186 475 MobiDBLite consensus disorder prediction 1 40 - -
Gma08g00186 475 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Gma08g00186 475 Gene3D - 289 464 - -
Gma08g00186 475 SMART efh_1 399 427 IPR002048 GO:0005509
Gma08g00186 475 SMART efh_1 434 462 IPR002048 GO:0005509
Gma08g00186 475 SMART efh_1 327 355 IPR002048 GO:0005509
Gma08g00186 475 SMART efh_1 363 391 IPR002048 GO:0005509
Gma08g00186 475 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Gma08g00186 475 PANTHER SERINE/THREONINE-PROTEIN KINASE 164 466 - -
Gma08g00186 475 SUPERFAMILY EF-hand 319 460 IPR011992 -
Gma08g00186 475 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 164 466 - -
Gma08g00186 475 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Gma08g00186 475 ProSiteProfiles Protein kinase domain profile. 54 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00186 Gma-Chr8 1641287 1646291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00186 43 474 EF-hand Containing Proteins AT4G23650 73.060 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma08g00186 Pkinase 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00186 K13412 - gmx:100777096 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00186 08 1641287 1646291 Gma08g00186 08 1641287 1646291 ECH
Gma05g02083 05 42104891 42111333 Gma08g00186 08 1641287 1646291 GST
Gma01g02232 01 57528276 57533404 Gma08g00186 08 1641287 1646291 PCT
Gma11g00183 11 1429109 1433698 Gma08g00186 08 1641287 1646291 PCT