Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00183 ATGGAACAGAAAAGCATTCTGATATCGGCTTTGGGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCCTCTGGACAAAGCGTTGGAAAATGGGGAGCCAACACTTTCTCCTCGAACGCTATTACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGACGGAAGAGAAAGCAACGCCACTTTTGATAAATTCCCTTATTACCTCAGTGAGCAAACACGGGTTTTGCTGACAAGTGCGGCTTATGTCCATTTAAAGCATGCTGAGGTTTCTAAGTATACACGTAATCTTGCTCCTGCAAGCCGGACTATTCTGCTTTCAGGGCCAGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTTTTCCAACATGGAATCTTCTTTCAGAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACCTAAAGGCAAAATGAACAGGCCTAGCAGTGGAGTGGACCTCCAATCAATGGGGGCTGAAGCATCTTGTAATCCTCCAATACTCCGTAGGAATGCTTCTTCCTCTTCAAATATTAGTGGCCTTGCTTCGCAAACCTATCCTACAAATTCAGTTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGACGAAAAGCTTCTTATACAGTCTCTCTATAAGGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATTTGCGGGATGTTGATAGGCTGTTATATAAATCACAAAGGATATATAACTTGTTCCAAAAAATGTTGAAGAAACTATCTGGACCAGTTTTGATTCTTGGTTCTCGAGTTATAGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAAATTAATTCGCTCTTCCCATACAACATAGAAATCAGGCCACCAGAAGATGAATCGCATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATTTGAAGATGATACAAGTTCAGGATAACAAAAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATTTGTGTCTCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACAGAAATGGGAAGCTCGTTATTTCTTCCAATAGTTTGTCCCATGCATTGAATATATTCCACAAGGGGAAATCCAGTAGAAGAGATACATCAAAATTGGAAGATCAAGCTGTAAAATCTGAGAAGCAAATAGAGGAGGGAACTGCTATGAAACCAGAAGCAAAGTCTGAAAATGCCGCTCCTGTAAAAAAGGCTGAAGCAGAAACATTAAGTTCAGTGGGAAAGACAGATGGTGAAAAATCAGTTCCTGCACCCAAAGCCGCTgaagttcctcctgataatgagtttgagaagcgaataaggcccgaggtaatactagcaaatGAGATTGATGTCACATTCTCTGATATTGGTGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTAGAAGGCCAGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTttggacctcctggaactgggaagacaatgctggcaaaggccattgcAAAGGAGGCCGGAGCAAGTTTCATCAATGTGTCCATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACACTTGCAGCCAAGGTCTCCCCAACTATAATATTCGTGGATGAGGTTGATAGCATGCTTGGGCAACGGACCAGAGTTGGGGAACATGAAGCCATGAGGAAAATAAAGAATGAATTTATGACCCATTGGGATGGACTTTTGACAAAGCAAGGGGAGCGGATCCTTGTTCTTGCTGCAACCAATAGGCCTTTCGACTTGGATGAAGCTATTATTAGGCGATTTGAAAGAAGGATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTATCGGCCTGTTAGAGAGCTAATTCAGCAAGAGAGGATAAAGAGTCTGGATAAAAAGCAGAAAGCTTCCAGGGGACAGAATAAAGATGTCCAAGAAAGTCGAGGACAATCCGTAGTAGGAAATACTCAAGATGCTCTAGATGAAGAAGAGGAAGTTAAACAGGAAAGAGTTATTATTACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAAAATCAGgttgctgcaagctttgcagctgaaggggctggaatggTGGAGTGCTATCTGAAGAAGCTGCAATAG 2514 0.3922 MEQKSILISALGVGVGVGVGIGLASGQSVGKWGANTFSSNAITAEKMEQEMLRQVVDGRESNATFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGFSNMESSFRRSTSETTLERLSDLFGSFSIFSQREEPKGKMNRPSSGVDLQSMGAEASCNPPILRRNASSSSNISGLASQTYPTNSVPLKRTTSWSFDEKLLIQSLYKVLAFVSKTYPIVLYLRDVDRLLYKSQRIYNLFQKMLKKLSGPVLILGSRVIDSGNDYEEVDEKINSLFPYNIEIRPPEDESHLVSWKSQLEEDLKMIQVQDNKNHIMEVLAANDLDCDDLDSICVSDTMVLSNYIEEIIVSAISYHLMKNKDTEYRNGKLVISSNSLSHALNIFHKGKSSRRDTSKLEDQAVKSEKQIEEGTAMKPEAKSENAAPVKKAEAETLSSVGKTDGEKSVPAPKAAEVPPDNEFEKRIRPEVILANEIDVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDNELEFKEIATMTEGYTGSDLKNLCTTAAYRPVRELIQQERIKSLDKKQKASRGQNKDVQESRGQSVVGNTQDALDEEEEVKQERVIITLRPLNMQDFKEAKNQVAASFAAEGAGMVECYLKKLQ 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00183 837 SMART AAA_5 103 334 IPR003593 -
Gma08g00183 837 SMART AAA_5 558 695 IPR003593 -
Gma08g00183 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 373 IPR027417 -
Gma08g00183 837 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Gma08g00183 837 Gene3D - 521 693 IPR027417 -
Gma08g00183 837 MobiDBLite consensus disorder prediction 434 472 - -
Gma08g00183 837 MobiDBLite consensus disorder prediction 434 505 - -
Gma08g00183 837 Gene3D - 694 775 - -
Gma08g00183 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 759 IPR027417 -
Gma08g00183 837 MobiDBLite consensus disorder prediction 758 789 - -
Gma08g00183 837 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 830 - -
Gma08g00183 837 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 830 - -
Gma08g00183 837 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Gma08g00183 837 CDD AAA 560 693 - -
Gma08g00183 837 Pfam AAA+ lid domain 717 751 IPR041569 -
Gma08g00183 837 MobiDBLite consensus disorder prediction 770 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00183 Gma-Chr8 1605996 1613035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00183 509 754 Calmodulin-binding Proteins AT3G56690 38.976 3.82e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00183 - - gmx:100807464 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00183 08 1605996 1613035 Gma08g00183 08 1605996 1613035 ECH
Gma05g02080 05 42071981 42079891 Gma08g00183 08 1605996 1613035 GST
Gma11g00184 11 1436773 1444769 Gma08g00183 08 1605996 1613035 PCT