Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00168 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAGCTCATCAGATACATTACTACTCATGGATATGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGGAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGAAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCTTCGGTGTCTTCAACAACCATTGCACAAAGTATCGATCACAATTCTTCTGACCAGTTCAATTACAATTCCAATCTAGTACTAGACCACTTTCCCAACCATGATAACAATCTACAAACAAAACCACCAGTTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTTGACACTACTAGTTCACTAGAAGCTGGCACAGCAATAGACTGCAATAGTACTACTGTGCGAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACATGGAACTTGAGCCACCATCAGGTTCATGCACTTCCACCTCTCACAGTGAGTGTAGGTTTGGACACCACAAATTATTTGCCACCATTGATTGAGAACGTGGACAACATGGTCCCAATTGAGGTACAATCTTGTACCATGGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCGAGGCTTAAATGAATGGATGGTGGAGACGCAGCAACAATGTCCTAACTTTCTTTTTTGGGACAGTGTTGAAGGACAGCTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATATGCTTTCTCCTTTTCCTTCTTCTTTTATCTTCCTATTAAAGCATTTTCCATTTGCTGTATATAGTTTGACTGTGTGGACGACATTAATAATGGGTTTTTGCCCTTTACATTTACATGTCCTTTTATACCAACAACCTATCATTCCTGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTCTCGCGAGTATGTGAGGGAGACTTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAACAGGCCAAGCCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGAAGGGGAGCGTAGGTTTGGTGGTGATCGTGATGGATACCGTGGAGGTCCCCGAGGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCTAA 1617 0.4527 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSSVSSTTIAQSIDHNSSDQFNYNSNLVLDHFPNHDNNLQTKPPVQETLFSSTCPLFMFDTTSSLEAGTAIDCNSTTVRAEHFQDAVGLSTETWNLSHHQVHALPPLTVSVGLDTTNYLPPLIENVDNMVPIEVQSCTMDEQGDIALECLQRRGLNEWMVETQQQCPNFLFWDSVEGQLGGEELAPNSSNVEANMLSPFPSSFIFLLKHFPFAVYSLTVWTTLIMGFCPLHLHVLLYQQPIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGGPGGDFGGDKGGAPADYRPSFGGAGGRPGFGRGSGGFGAPTSSNLP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00168 538 CDD SANT 69 112 IPR001005 -
Gma08g00168 538 PANTHER 40S RIBOSOMAL PROTEIN S10 278 537 IPR037447 -
Gma08g00168 538 Gene3D - 69 140 - -
Gma08g00168 538 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma08g00168 538 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma08g00168 538 Gene3D - 6 66 - -
Gma08g00168 538 CDD SANT 17 61 IPR001005 -
Gma08g00168 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma08g00168 538 Pfam Plectin/S10 domain 360 451 IPR005326 -
Gma08g00168 538 MobiDBLite consensus disorder prediction 469 485 - -
Gma08g00168 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma08g00168 538 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma08g00168 538 MobiDBLite consensus disorder prediction 448 538 - -
Gma08g00168 538 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma08g00168 538 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma08g00168 538 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 278 537 - -
Gma08g00168 538 Gene3D - 359 461 IPR036388 -
Gma08g00168 538 SMART sant 66 114 IPR001005 -
Gma08g00168 538 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00168 Gma-Chr8 1444710 1452348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00168 1 305 MYB Transcription Factor Family AT1G63910 51.852 7.73e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma08g00168 S10_plectin 9.3e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00168 K09422 K02947 gmx:100803556 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00168 08 1444710 1452348 Gma08g00168 08 1444710 1452348 ECH
Gma05g02066 05 41902685 41905130 Gma08g00168 08 1444710 1452348 GST
Gma01g02222 01 57429212 57431532 Gma08g00168 08 1444710 1452348 PCT
Gma11g00197 11 1547849 1549951 Gma08g00168 08 1444710 1452348 PCT