Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00162 ATGGCCCGACAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCAACTCATCATGGGTTGTTCTACTCAGATGTGTCATCCCATAACCAAACTATTCAATCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGAGACCGACCCAGAGATGTTCAACCTCACCACAGGCATGGAGATGATAGGGTTTTCCAAGAACCTTGAGCAAAACAGTGAAAGCAACGGTGTCATGTGGAAAAGTTTCTTCTGCAAACCAGGTCAACACGCGGGTCCTTCCTCTTCCAAAACGATGAACGAGTCTTGTAGCAATTTTTATAACCACCAGCATGATCATAAGTATAATAAGCAAGACTTCACATCAGGGATTAATTCTGAGACAAGTACCGATAACTTAGTTGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGGTTGATGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGGCCGAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAATCCTTCAGGTATTGGCTTGCAATCTTTTGAGCTAAGACAAACAACAAGCCATCATCATCATCAGCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGTTTTTTTGGAAAGCCAGTCAATGCTCAACAACAACAAGAAATGTTGCAAGATGGGTATTTGAGTCCTAACAAAGCTGCGAATATTTATCAGCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTTCACAGGTCCTTCTGAACGAGTTTTGTAGCCTAGGGACAAAGGAAAATGATGTGCCAAAGCAAAAGAACAAGCAGTGGGAAGAAGGTAATAATAACGGTGGTGGTTCCTCCAAGAACCATTCTCTTAGCTCTCTAGAGTTTGTGGAATTGCAGAAGAGAAAGACAAGGCTGCTCGCGATGCTGGAAGAGGTTGATAGAAGATACAAACACTACCGTGACCAAATGAAGGCAGTGATGTCCTCCTTTGAAGCAGTGGCGGGTAATGGTGCAGCCACTGTTTACTCGGCTTTGGCTTTGAAAGCCATGTCAAGGCATTTTAGGTGTTTGAAGGATGGAATTATGGATCAAATTCGAGCCACAAGAAAAGGCATGGGAGAGAAAGAACTCGCTGCAGTACCCGGCACAACAAGGGGCGAAACACCTAGGCTTAAAATCATTGACCAATCACTGAGACAACAAAGGGCCTTTCAGCAAATTAGCATCATGGAAACTCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGAGCTTGGCTTTTCGAGCACTTTCTGCATCCGTACCCAAGCGATGTTGATAAACATATCCTAGCCCGCCAAACCGGTCTCTCCAAAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTATTTGGAAGAAGAGAAGGAGCATCAAAACGACGTAGCATCGTCGGAGGGAGGAGGCATCAATATTCTCGGGGATCAGAAGCCAACACAGGCTCGACTCGTTCGAATTGACTCAGAGTGCATGTCGTCTATCGTCAACAACCCAGATGACAAAAACGACACAAAGAGCGGCAAAACCATCCAAAACGACAACCAAATGGACGCATTCGGGTCGGTGGAGCTTGACTTTTGGTCCTACACGCACCAGTACTCCTCCGGACACAGTGGCGGCGTGTCGTTGACGCTGGGGTTACAGCAGCACGGTGAAAGCGGGGTGAGTTTAGCATTCCCGCCAGCGGCAACACAGAGCTCCATGTTTTACCCACGGGATCAGATTGAAGATTGCCAAACAGTTCAGTACTCTCTTGTGGATGGCAAAGGACAAAACATGCCTTATAGGAATCTCATGGGGACACACTTGCTTCATGATCATTTGGTATGA 1941 0.4632 MARQLCEDKSKDMASSTHHGLFYSDVSSHNQTIQSHLMNHIQGFVTETDPEMFNLTTGMEMIGFSKNLEQNSESNGVMWKSFFCKPGQHAGPSSSKTMNESCSNFYNHQHDHKYNKQDFTSGINSETSTDNLVVGGAHDSAPWQENRLMVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSGIGLQSFELRQTTSHHHHQQHLSDFVSREGFFGKPVNAQQQQEMLQDGYLSPNKAANIYQQGHFLIKNSKFLVPSQVLLNEFCSLGTKENDVPKQKNKQWEEGNNNGGGSSKNHSLSSLEFVELQKRKTRLLAMLEEVDRRYKHYRDQMKAVMSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDQIRATRKGMGEKELAAVPGTTRGETPRLKIIDQSLRQQRAFQQISIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSKSQVSNWFINARVRLWKPMVEEMYLEEEKEHQNDVASSEGGGINILGDQKPTQARLVRIDSECMSSIVNNPDDKNDTKSGKTIQNDNQMDAFGSVELDFWSYTHQYSSGHSGGVSLTLGLQQHGESGVSLAFPPAATQSSMFYPRDQIEDCQTVQYSLVDGKGQNMPYRNLMGTHLLHDHLV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00162 646 Pfam Homeobox KN domain 439 478 IPR008422 GO:0003677|GO:0006355
Gma08g00162 646 ProSiteProfiles 'Homeobox' domain profile. 419 482 IPR001356 GO:0003677
Gma08g00162 646 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 601 - -
Gma08g00162 646 SMART prehox3 241 370 IPR006563 -
Gma08g00162 646 SUPERFAMILY Homeodomain-like 423 488 IPR009057 -
Gma08g00162 646 MobiDBLite consensus disorder prediction 270 295 - -
Gma08g00162 646 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 601 - -
Gma08g00162 646 Pfam Associated with HOX 247 368 IPR006563 -
Gma08g00162 646 SMART HOX_1 422 486 IPR001356 GO:0003677
Gma08g00162 646 MobiDBLite consensus disorder prediction 280 295 - -
Gma08g00162 646 CDD homeodomain 422 483 IPR001356 GO:0003677
Gma08g00162 646 Gene3D - 425 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00162 Gma-Chr8 1391922 1395798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00162 98 643 Homeobox Transcription Factor Family AT5G41410 44.663 3.07e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma08g00162 POX 5.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00162 - - gmx:100792789 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00162 08 1391922 1395798 Gma08g00162 08 1391922 1395798 ECH
Gma05g02059 05 41842261 41844156 Gma08g00162 08 1391922 1395798 GST
Gma01g02215 01 57376929 57380785 Gma08g00162 08 1391922 1395798 PCT
Gma11g00202 11 1592377 1595541 Gma08g00162 08 1391922 1395798 PCT