Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00160 ATGGGTTTCCCAGTGGGGTACTCGGAGCTCCTGTTCCCGAAGCTTCTCCTTCACATCCTCTCCCTCTTGGGCCTCCTCAGGAAGCTGATTTGCAGCCTCCTCCGCTTCATGGGCCTCCACGACTTCCTCGAGCCCGACATTGCCGCCTGGCCCGAAACCCGAATGCCCGAAGAATTCGAGTCCGTGTCGGCCACGCTCATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCCCCGGAGACGTGCGCGGTGTGTCTGAGCGAGTTCGAGGAAAACGATGAGATCAGACAGCTGGCGAATTGTCGCCACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACATGCCCTCTCTGCAGAATGCCCTTTATACCCGACGAAATGCAAGGTGCTTTTATTGAGAGACTCTGGGCTGCCTCTGGTATCGCTGAATATCCGCATGTTGCTCCTTTCTAG 483 0.5714 MGFPVGYSELLFPKLLLHILSLLGLLRKLICSLLRFMGLHDFLEPDIAAWPETRMPEEFESVSATLIREILPVVKFRELVDPPETCAVCLSEFEENDEIRQLANCRHIFHRGCLDRWMGYDQRTCPLCRMPFIPDEMQGAFIERLWAASGIAEYPHVAPF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00160 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Gma08g00160 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 153 - -
Gma08g00160 160 Pfam Ring finger domain 85 129 IPR001841 -
Gma08g00160 160 SMART ring_2 86 128 IPR001841 -
Gma08g00160 160 PANTHER BRH1 RING FINGER PROTEIN 1 153 - -
Gma08g00160 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Gma08g00160 160 SUPERFAMILY RING/U-box 66 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00160 Gma-Chr8 1362860 1363582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00160 1 150 C3H Transcription Factor Family AT1G63840 56.494 5.80e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00160 K16281 - gmx:100817079 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00160 08 1362860 1363582 Gma08g00160 08 1362860 1363582 ECH
Gma05g02057 05 41811922 41812410 Gma08g00160 08 1362860 1363582 GST
Gma01g02213 01 57346032 57346587 Gma08g00160 08 1362860 1363582 PCT
Gma11g00205 11 1628716 1629671 Gma08g00160 08 1362860 1363582 PCT