Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00146 ATGGAGAGTAAAGAGGAAGATGTTAACGTTGGAGCAAACAAGTTCTCAGAAAGGCAACCAATTGGTACAGCAgctcagggtggtggtgacaaggactacaaggaggcacccccagctcctttgtttgaacctggtgagctcaaatcatggtccttctacagagctggaattgctgagtttgtggcaactttcttgttcctctacattaccatcttAACTGTCATGGGTGTCAACAGGTCACCCTCCAAGTGTGCCTCTGTTGGCATTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGggggacacatcaacccagctgtgaccttTGGTCTGTTTTTGGCAAGGAAGCTGTCCCTAACAAGGGCACTGTTCTACATTATCATGCAGTGTCTTGGAGCCATCTGCGGGGCTGGTGTGGTGAAGGGCTTTGAGGGCAATGCTAACTATGAGTTGTTCAAAGGAGGAGCCAATTTTGTGAATTCTGGATACACCAAAGGTGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTCGGAGCTGCCATCATCTACAACAGAGACCATGCATGGGATGACCAATGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTGTGTATCACCAGATAGTCATCCGAGCCATTCCTTTCAAGACAAGGGCTTAG 870 0.3874 MESKEEDVNVGANKFSERQPIGTAAQGGGDKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNANYELFKGGANFVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKTRA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00146 289 Pfam Major intrinsic protein 46 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 Gene3D Glycerol uptake facilitator protein. 39 287 IPR023271 -
Gma08g00146 289 MobiDBLite consensus disorder prediction 1 32 - -
Gma08g00146 289 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Gma08g00146 289 TIGRFAM MIP: MIP family channel proteins 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 CDD MIP 54 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g00146 289 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 288 - -
Gma08g00146 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Gma08g00146 289 SUPERFAMILY Aquaporin-like 46 281 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00146 Gma-Chr8 1236334 1238103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00146 1 288 Major Intrinsic Protein MIP AT4G23400 87.847 3.20e-177 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00146 K09872 - gmx:100780356 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00146 08 1236334 1238103 Gma08g00146 08 1236334 1238103 ECH
Gma05g02041 05 41687902 41689290 Gma08g00146 08 1236334 1238103 GST