Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00142 ATGGTGCCAGAGAACTTGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTACCCAACCCGGGGTGTTGAGCTGGGGGGAAGGGTATTACAATGGAGACATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTCAATTCTGACCAAATAGGGTTGCAGAGGAGTGAACAGCTGAGAGAACTATTCAAATCCCTCAAAACTGTAGAAGTCACCCCTCAAACCAAAAGGCCTTCAGCAGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCAAAGGGTCAACCCATTTGGCTGAACAATGCCCATTCTTCTGATTGTAAAATTTTTAGCCGTTCTCTTCTGGCAAAGGTGGATTCTACGGTTGTGTGCTTTCCGTTTAGGGAAGGGGTTATTGAGTTAGGTACTACTGAACAGGTCCCAGAAGATTTGAGTGTCATTGAACTGATCAAAACTTCTTTCTTGAATAGTCTGCATGCCAATGTTCCCAATAAGTCAGTAGCTACATTGAAATCAAGGAACCAGGAAGGTCTTTCTTATGCAGCATTTGATCATAATGACTATAATGTTAAATCAATTCCAGAAGTTGGGTATGAAATAGCCAACACAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCGCTAGATGAAACATTTATGATTGAAAGTATAACCAATGGCACTTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCTGCCCTGAGAATATTGCTTCTGCCCCCAAGTCTAACAACCCTTCTGATCCTTGTGCCCGAAATTTTCAAAAGTGCAACAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGATTTGCACTATCAGAGAGTTCTTTCTACCCTTATAAAAAGTTCTGACCAGTTACTTATGGGAATGCATTTGCAAAAATTTCCTCAGGAATCAAGCTTTGTTAGTTGGAGGAAAGAACAGCCAATGGATTGCAAATGGCCAAGAGCAGGAACGTCACAAAAGTTATTGAAGAAAGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGAGTAGAGGCTGATGAAAACGGCATGAACCATGTTATGTCAGAAAGGAGGAGGAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTAGATGATGCTATTGATTACCTTAAAAAGCTCGAGAGAAGGGTAAAAGAGTTGGAAGCTCACAGGGTGGTAACAGACATAGAGACTGGGACTAGAAGATCACCACAAGATACGGTGGAGAGGACTTCTGATCATTATTTTAGGAAAAATAATAATGGCAAGAAACCAGGGATGAAAAAGAGGAAGGCTTGTGGTGTAGATGAGACAGAAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATGTTACTGTGAGTACCAGTGACAATGAAATTGTGATCGAATTGAAGTGCCCCTCGAAAGCAGGAAGGCTGCTAGAAATTATGGAAGCAATCAACAGTTTCAATATAGATTTTAGTTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGACCAAGTGTTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAATTGGCTTCCAAGTGCTGA 1887 0.4075 MVPENLKKQLALAVRSIHWSYAIFWTDSTTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTVEVTPQTKRPSAAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQPIWLNNAHSSDCKIFSRSLLAKVDSTVVCFPFREGVIELGTTEQVPEDLSVIELIKTSFLNSLHANVPNKSVATLKSRNQEGLSYAAFDHNDYNVKSIPEVGYEIANTTSPDGSSNAFQANQPLDETFMIESITNGTSQVQNWQVIDDELSNCVHNSMNSSDCISQTFACPENIASAPKSNNPSDPCARNFQKCNNPKMTLVDPRSDDLHYQRVLSTLIKSSDQLLMGMHLQKFPQESSFVSWRKEQPMDCKWPRAGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRVEADENGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIDYLKKLERRVKELEAHRVVTDIETGTRRSPQDTVERTSDHYFRKNNNGKKPGMKKRKACGVDETEKEINSDALKGSYANDVTVSTSDNEIVIELKCPSKAGRLLEIMEAINSFNIDFSSVQSTEADGNLYLTIKSVLTGPSVATTKRIKQALQKLASKC 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00142 628 ProSiteProfiles ACT domain profile. 560 628 IPR002912 -
Gma08g00142 628 Coils Coil 465 492 - -
Gma08g00142 628 Pfam Helix-loop-helix DNA-binding domain 430 476 IPR011598 GO:0046983
Gma08g00142 628 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 188 IPR025610 -
Gma08g00142 628 SMART finulus 432 481 IPR011598 GO:0046983
Gma08g00142 628 PANTHER TRANSCRIPTION FACTOR EGL1 3 623 - -
Gma08g00142 628 Gene3D - 420 488 IPR036638 GO:0046983
Gma08g00142 628 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 426 475 IPR011598 GO:0046983
Gma08g00142 628 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 429 485 IPR036638 GO:0046983
Gma08g00142 628 PANTHER TRANSCRIPTION FACTOR TT8 3 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00142 Gma-Chr8 1199857 1203256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00142 2 628 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.659 2.38e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g00142 bHLH-MYC_N 9.4e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00142 - - gmx:100808167 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00142 08 1199857 1203256 Gma08g00142 08 1199857 1203256 ECH
Gma05g02037 05 41651740 41655295 Gma08g00142 08 1199857 1203256 GST