Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00117 ATGTGGGGTTGGATGGTCGGGGAAGCTGGTAGGGCAGCGTGCAACTGGAACTGGGTTTCGCTCCGAAACATGGGTGGCGGTCCTCGCACCTTTCCCGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCTCGCCAGAGACAAACAGAACAGACTCATCGAACAAGAGAAGCAGCTCTACCAAGCTCGCATTCGCTCCCACATCCGCTCCACCCTCTCCCCCGACCACCAATCCGCCGCCGCCGCCACCCACCGCCCCCTCTCCCCTAACGACCACGTCAAAGCCCTCGCCGATCGCTTCGTCAAAGAAGGCGCCGAAGACCTCTGGAACAACCACGACGGTCCCCTAACTCCGAACCCAACACCGAACCTCAATTTTGGCCCCAAACACACCAGGGGTTACCGTTCTGTTCCCGAGGTTGGGAACAGTCGTGTTGGGGCCCACAAGTATAGGTTTTGGCGAAAGGGTAGTGATGATTCTTCTTCTAGTGAGAGTGAGAGTGAAGTTGAATTGAGTGTGAAGAAGAGGGGTAGTAGTGCTTCTTTGGGGGAATATGATGTCAAGAGAGAGAGGAGGGTTGTGCCCAAGACATCTCCAGAGGTTGAGTTTATTAGGTATCAGCTTAATAAGAGGAAGTTGAGCCAGATTGAGGAACAACAGAGTCAAGAGCAACAACAAAGCAATGAAAGCATTCTAAGCAACACAAGGTTTGACGAGTGCGGTATATCGCCACTGACGGTCAAGGCACTTTCTTCAGCTGGTTATGTTCAAATGACCCGCATACAAGAGGCTAGCCTACCTATTTGCCTTGAGGGGATGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGAAAAAGTGTAGCTTTTTTGCTTCCTGCAATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACATCTCAACGGGTGCCTCCAATATATGTTCTAATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCAGCTGTAGCAAAGGTTTTGCTGAAATATCATGAGACCATCGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCACATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGACCATTTACTGGACCTAGGATTCAGAAAGGATGTAGAAAAAATTGTTGATTGTTTGCCCCGTCAGCGGCAATCTTTGCTGTTTTCTGCAACCATGCCAAAGGAGGTCCGTCGTGTATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGTGTAGAAACTCCTGTTAAGGTGAAGCAATCTTATCTTATTGCTCCTCATGAGTCACATTTTCAGTTGGTGCACCAAATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTGTTACTGGGATGGTGACATCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCGCGGGGAATGAATTATCCTGATGTTACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGTCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGGAAGGTGTACTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTACCTCTACAAAATTTCCCCTTACCAGATATAAATCCACATACAAAGCTTAAGATTGAGAATTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTGGGCTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATGGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCGGCTCTCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAAATAG 2124 0.4581 MWGWMVGEAGRAACNWNWVSLRNMGGGPRTFPGGVNKWKWKRMHEKLARDKQNRLIEQEKQLYQARIRSHIRSTLSPDHQSAAAATHRPLSPNDHVKALADRFVKEGAEDLWNNHDGPLTPNPTPNLNFGPKHTRGYRSVPEVGNSRVGAHKYRFWRKGSDDSSSSESESEVELSVKKRGSSASLGEYDVKRERRVVPKTSPEVEFIRYQLNKRKLSQIEEQQSQEQQQSNESILSNTRFDECGISPLTVKALSSAGYVQMTRIQEASLPICLEGMDALVKAKTGTGKSVAFLLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYHETIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATMPKEVRRVSQLVLKREHKYVDTVGMGCVETPVKVKQSYLIAPHESHFQLVHQILKEHILQTPDYKVIVFCVTGMVTSLMYNLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGVLLIAPWEEYFLDEIKDLPLQNFPLPDINPHTKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTMAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00117 707 Pfam DEAD/DEAH box helicase 262 440 IPR011545 GO:0003676|GO:0005524
Gma08g00117 707 MobiDBLite consensus disorder prediction 157 176 - -
Gma08g00117 707 Coils Coil 41 61 - -
Gma08g00117 707 Pfam Helicase conserved C-terminal domain 486 589 IPR001650 -
Gma08g00117 707 Gene3D - 462 687 IPR027417 -
Gma08g00117 707 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 238 266 IPR014014 GO:0003724
Gma08g00117 707 MobiDBLite consensus disorder prediction 111 144 - -
Gma08g00117 707 SMART ultradead3 257 468 IPR014001 -
Gma08g00117 707 Gene3D - 207 453 IPR027417 -
Gma08g00117 707 SMART helicmild6 510 591 IPR001650 -
Gma08g00117 707 CDD SF2_C_DEAD 467 600 - -
Gma08g00117 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 608 IPR027417 -
Gma08g00117 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 452 IPR014001 -
Gma08g00117 707 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 211 706 - -
Gma08g00117 707 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 27 119 - -
Gma08g00117 707 PANTHER RNA HELICASE 211 706 - -
Gma08g00117 707 PANTHER RNA HELICASE 27 119 - -
Gma08g00117 707 MobiDBLite consensus disorder prediction 157 178 - -
Gma08g00117 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 632 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00117 Gma-Chr8 999645 1003801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00117 229 616 Eukaryotic Initiation Factors Gene Family AT3G19760 26.667 9.48e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00117 - - gmx:100808520 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02013 05 41459762 41462720 Gma08g00117 08 999645 1003801 GST