Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00108 ATGGATTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAAGTGGGAAATTCTGGCAGGGAATCATCAGTGTTGACTAAGTCCAAAGATGGTGGTGCTGTTGGAGTCTCCAAAATGATATCCTCATCTTCTTCAGGGTCAGCTAAGAGAGCTCGTTCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTGGACGGGTGCCACTCTGATCTCAGTAACTGCAGAGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCACAACCAGAAGTTGTTCTAACGCGGTCTGCTAGTTTTTTGTCGAATTACCACCAAGGCACACAATTGCTATCTTTCTCAAGTTCACATGTGTACCCATCCACTACTGTGGTGAATCCTACTTTGGGTGGAGTTGTTACTTCTGGTGATGTAAGGCTTCATGGGCAGAACCACCACCACCACCAAATGCATTTGGTTGATAAACAGGACCTGTTTCTTGGATCTTCTCCAACCGGTTACAAGGAAGGGAAGCATTTGGCATTCATGCAAGGTGACCACACCCTCAACAACCAGAGCCCACATCTTCCAGGTGCTTCCGTGGGCCCGGCCCAGATGTTTCTTAGGACCAGCCCGTATTCAGAAAGCGGTGGATTGAGATGCAAAATGTTCTGCGATAGCCTAACAGGTTCGGCCCACGGCAACACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACCACAGCCGCACAGTCCTGGAAATGGATTAAACCAAATGGTGAACCCTCACTCGCCACTTATGCAACCCTTGGGCCTGAGCCTGCATGATAACAGCCTGGGCTCCGTGGACCCGGTTTTGGGCCCCAACGGGAGTGACCATTCCTCATCAATGCATCACATAGGTTCTAATGGATCCCAGGTGAATGAGGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1191 0.492 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGRESSVLTKSKDGGAVGVSKMISSSSSGSAKRARSLSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEVVLTRSASFLSNYHQGTQLLSFSSSHVYPSTTVVNPTLGGVVTSGDVRLHGQNHHHHQMHLVDKQDLFLGSSPTGYKEGKHLAFMQGDHTLNNQSPHLPGASVGPAQMFLRTSPYSESGGLRCKMFCDSLTGSAHGNTSRALSLLSSPPQPHSPGNGLNQMVNPHSPLMQPLGLSLHDNSLGSVDPVLGPNGSDHSSSMHHIGSNGSQVNEAPPLFPFQWE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00108 396 MobiDBLite consensus disorder prediction 365 388 - -
Gma08g00108 396 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Gma08g00108 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 396 IPR044817 GO:0003677
Gma08g00108 396 MobiDBLite consensus disorder prediction 312 341 - -
Gma08g00108 396 Pfam SBP domain 98 171 IPR004333 GO:0003677
Gma08g00108 396 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Gma08g00108 396 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
Gma08g00108 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 396 - -
Gma08g00108 396 MobiDBLite consensus disorder prediction 312 343 - -
Gma08g00108 396 MobiDBLite consensus disorder prediction 365 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00108 Gma-Chr8 946692 949230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00108 1 396 SBP-box Gene Family AT5G50670 40.831 6.63e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma08g00108 SBP 3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00108 - - gmx:100805328 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02000 05 41376760 41379554 Gma08g00108 08 946692 949230 GST
Gma08g00108 08 946692 949230 Gma04g01910 04 49364806 49376426 PCT
Gma08g00108 08 946692 949230 Gma06g01499 06 14455632 14460234 PCT
Gma04g01910 04 49364806 49376426 Gma08g00108 08 946692 949230 PCT
Gma06g01499 06 14455632 14460234 Gma08g00108 08 946692 949230 PCT