Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00085 ATGGCAGCTTTTTCATCCCAATACTACCATCCGTTTCTGGTTGACTCCGCATGCCTCTCAATTACTCCTCCCATTATAAACACTTCTAGTACCCTTCCTCCTTCTCCTCATTATCTTCTCAATAATAATAACATTCATATTCAGGAAACCTCTTATAGCGTCACTAATAATCAGGAAACAAGCTGTGTTGATAATCAAAGCTCCAAGGTTACCACCATCAGTGACACTGAGTATTCTGTGGTCAACAAAAACCATAGTCCTGAGACATCCATGGTTGTTGACAAACTTGAAAAAGGTGAGCAGTTCACTCAGAAGGTGGTGACCCCCATGGAGAAGGAGAAGAAGAGAAGAGCAAGAAATGGATCTTCCAAGGAATCAACAGAAGGGGGAAACGAGAAACAAAAGAAGCCAAAAGAAGTGAAGAAGGATGAGAAAAAAGGTGCTGAAgatcctccaactggctatatccacgttagagctagaaggggtcaagcaacggatagtcacagccttgctgaaagggtgagaagagagaaaataagtgaaaggatgaagacgttgcagcgacttgtgccaggctgtgataagGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCATTAGTGAATCCCATGTTCTATGACTTGGCCATAGACTTAGACACTCTCATGGTTAGACCCGATCAGAAATTAAATTATAATATAGCATCACCATCACCATGTTTAGCACAATTCAGACCCAACCAGGCCATTGCTTTTGCTGACACAACCACTACCAACAGTTTCCCCACAGCTAATAATGGTGACTATCTTTTGGATTATTCATCCTCACTTTTTCTTCAAGGCCCGAGATCAAATCTCTTCTTTGAGTATAACGGTGGTCAGTTTTGGGACGTGGAAGACCAACGACAAAAGTTTCTTCATCCTTATGGATTCGGCAATAATTCGGGCTCTTTCAATTAA 1020 0.352 MAAFSSQYYHPFLVDSACLSITPPIINTSSTLPPSPHYLLNNNNIHIQETSYSVTNNQETSCVDNQSSKVTTISDTEYSVVNKNHSPETSMVVDKLEKGEQFTQKVVTPMEKEKKRRARNGSSKESTEGGNEKQKKPKEVKKDEKKGAEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLALVNPMFYDLAIDLDTLMVRPDQKLNYNIASPSPCLAQFRPNQAIAFADTTTTNSFPTANNGDYLLDYSSSLFLQGPRSNLFFEYNGGQFWDVEDQRQKFLHPYGFGNNSGSFN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00085 339 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 339 - -
Gma08g00085 339 Gene3D - 161 231 IPR036638 GO:0046983
Gma08g00085 339 MobiDBLite consensus disorder prediction 102 176 - -
Gma08g00085 339 CDD bHLH_AtBPE_like 154 239 - -
Gma08g00085 339 SMART finulus 170 220 IPR011598 GO:0046983
Gma08g00085 339 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 339 IPR024097 GO:0006355
Gma08g00085 339 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Gma08g00085 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Gma08g00085 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00085 Gma-Chr8 724654 727411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00085 32 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.000 4.20e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g00085 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00085 - - gmx:100777509 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00085 08 724654 727411 Gma08g00085 08 724654 727411 ECH
Gma05g01980 05 41143538 41146124 Gma08g00085 08 724654 727411 GST