Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00076 ATGGCGACGTCGGAGGTATCGATCAAGGGAAATTCGGTAAACGGAAAAGGAGATAACAGTTCTGGTGATGCTAGAAACAGTGGAGGCGAGGCTCAGAATGCTTCTTCATCATCATCATCCGCGAGAGACGCGGAAGCTGCGCTTTACAGGGAGCTGTGGCACGCGTGTGCAGGTCCTCTGGTGACGGTGCCCAGAGAAAGAGAGCGCGTGTTCTACTTTCCTCAAGGACACATCGAGCAGGTGGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTCTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACTGATGAGGTGTTTGCTCAAGTGACTTTACTTCCTGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGGTCCTCCGGCGCCGCCTCCTAGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCGTCTGATACGAGCACACACGGTGGGTTTTCGGTGTTGAGGCGACATGCCGATGAATGCCTTCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGCCAACGAGTGGCGATTCAGGCATATTTTTCGGGgtcaaccgcgtagacacttgctgcaaagtggttggagtgtttttgtcagctccaagagactagttgctggggatgcgtttatatttttaaggggtgagaatggggaacttcgagttggtgttaggcgtgcaatgagacaacagggtaatgttccatcatcagttatctcaagccACAGCATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGCACCATGTTCACTGTGTATTACAAGCCCAGGACTAGTCCAGCAGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTCAAAAACAATTATACCATTGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGgtgagatgggatgaaacatcaaacataccacgtcCTGAGAGAGTTTCACAATGGAAGATAGAGCCTGCTCTTGCTCCTCTTGCTCTGAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCGGTTCTTACTCGTGAAGCTTCTAAAGTAAGCGTAGATCCTTTGCCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTTTCGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACGGCAGAGAAGTCTGGTGTGTGGCCACCTGCCACGGATGATGAAAAGATTGATGTTTCTACCTCAAGAAGGTATGGGTCAGACAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTACTTTCAGGCTTTGGGGCCCACGGAGATCATTCATCCCATCCATCATTTGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTGCTGGATCGTGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGGAGTGCCATCTAGCCTATCACTGAATCTCTTGGACTCGAATTTAAAAGGCTCTGCTCAAGGCGGTGATACAGCTTACCAAGTACGAGGGAATCTGAGGTATAGTAGTGCATTTGGTGAGTACCCTGTGCTTCATGGACATAAAGTTGAGCATTCCCATAGAAGCTTTTTGATGCCACCACCACCATCAACTCAATATGAGAGTCCTCGTTCAAGAGAACTGTTGTCCAAACCAATATCAGGAAAACCTTGTGAGGTTTCAAAACTGAAAGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCGCCCCATTGCATCAGAGCCTTCTCTATCACAAAGAAATGTTACAAGTGAGTCAGTTGGTCACATGCATACAGCATCACACCATCAACGTGCAATTGAAAACGATCAGAAGTCTGAGCATTCTAGGGGTTCAAAACCAGCTGATGGTCTGCTGATTGATGACCACGAAAAGGTGTTACAAACTTCTCAGCCACATCTGAAAGATGTACAAGCAAAATCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGTATTGCACTTGGTAGGTCAGTGGACCTCACAAAATTCAGTGATTATGGGGAATTAATTACTGAATTGGATCAACTATTCGAATTTGGAGGTGAATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCTGCCAGTGAAGGTGCAGCAGACGCACAAGAAATCGAGTGTCAGCTCAATCATTCATCTTCAGATACCTGA 2556 0.4268 MATSEVSIKGNSVNGKGDNSSGDARNSGGEAQNASSSSSSARDAEAALYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPLALNPLPMPRPKRPRSNVVPSSPDSSVLTREASKVSVDPLPTSGFQRVLQGQELSTLRGNFAESNESDTAEKSGVWPPATDDEKIDVSTSRRYGSDSWMSMGRHEPTYPDLLSGFGAHGDHSSHPSFVDQNGPVANLSRKHLLDREGKHNVLSPWPGVPSSLSLNLLDSNLKGSAQGGDTAYQVRGNLRYSSAFGEYPVLHGHKVEHSHRSFLMPPPPSTQYESPRSRELLSKPISGKPCEVSKLKDSDCKLFGISLLSSRPIASEPSLSQRNVTSESVGHMHTASHHQRAIENDQKSEHSRGSKPADGLLIDDHEKVLQTSQPHLKDVQAKSHSGSARSCTKVHKKGIALGRSVDLTKFSDYGELITELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGAADAQEIECQLNHSSSDT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00076 851 Gene3D - 317 387 - -
Gma08g00076 851 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Gma08g00076 851 Gene3D - 151 256 IPR015300 -
Gma08g00076 851 MobiDBLite consensus disorder prediction 671 697 - -
Gma08g00076 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma08g00076 851 SMART B3_2 154 256 IPR003340 GO:0003677
Gma08g00076 851 MobiDBLite consensus disorder prediction 448 470 - -
Gma08g00076 851 MobiDBLite consensus disorder prediction 1 42 - -
Gma08g00076 851 MobiDBLite consensus disorder prediction 391 427 - -
Gma08g00076 851 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma08g00076 851 MobiDBLite consensus disorder prediction 597 626 - -
Gma08g00076 851 Pfam AUX/IAA family 714 815 IPR033389 -
Gma08g00076 851 PANTHER AUXIN RESPONSE FACTOR 2 33 834 - -
Gma08g00076 851 Gene3D - 723 816 - -
Gma08g00076 851 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Gma08g00076 851 MobiDBLite consensus disorder prediction 406 420 - -
Gma08g00076 851 MobiDBLite consensus disorder prediction 815 851 - -
Gma08g00076 851 ProSiteProfiles PB1 domain profile. 727 809 IPR000270 GO:0005515
Gma08g00076 851 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
Gma08g00076 851 MobiDBLite consensus disorder prediction 815 834 - -
Gma08g00076 851 MobiDBLite consensus disorder prediction 654 697 - -
Gma08g00076 851 SUPERFAMILY CAD & PB1 domains 729 804 - -
Gma08g00076 851 CDD B3_DNA 152 254 IPR003340 GO:0003677
Gma08g00076 851 MobiDBLite consensus disorder prediction 654 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00076 Gma-Chr8 661000 666526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00076 1 849 B3 DNA Binding Superfamily AT5G62000 64.538 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma08g00076 AUX_IAA 6.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00076 - - gmx:100780892 1662.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00076 08 661000 666526 Gma08g00076 08 661000 666526 ECH
Gma05g01973 05 41074783 41080023 Gma08g00076 08 661000 666526 GST
Gma08g00076 08 661000 666526 Gma04g01940 04 49809549 49814099 PCT
Gma08g00076 08 661000 666526 Gma06g01466 06 14019250 14024198 PCT