Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00071 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCTGCTTCATCCCACTATTTTGATGACATTTCCTTTCGCTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGACCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCTGGCAACATTTTGAACGCTACACCCCCCCTTGATGTAAATGCAAAAGCTGGCTTACTGTTGCCACAGGCTAGTCTACCTGGGGATAACATACATTCCACGGAATCATCGAATTACCGTACCAAATCATTGTCTAATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGCAACAAGATTGTGACCAATGCTGCCCCTTTTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTCTTCGGGAATGATGTTCGGTCTGATCATCCCATTACTGCTGGTTCTCCTCCCAAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGCAATCTCCTTCCCGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAGTGCTCTTGATGGAGATTTTGGTTTCTTTGGAAGTTCTAAAGGAAAACTTCCTTTAGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGGGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGgtcaatgctccagaaaaggatattggccatggtacactgatgctttctggtcttgattcacctgttttaaatgatgagcttaaacaaatttttggattttatggagaaattaaagaaATCTATGAATATTCAGAAATGAATAATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAAGCTGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGaacctggccaccctagTTTGATGCACCAGTCTCAAAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAGGCAACACTGCCTTCTGGAGTAATTGGATCTGGTTGCTTAGAAAATGGATATAATCAGAGATTTCAATCTACAGTTAGGCAACCTTTGAATGCATTTATGGATAATGCATTCATTCATGTGAATTCTGGCATTCACAACACTGTGAGAGGGGCACCTGCCGGAAAAGTGTCCAGTGTTTGTGAGTCAAGTAACTTTGTTGATGCAATGAAATTTGCATCTGGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATCAGGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTCTTCTCCGGGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCGCCCTGGGAAAGGCAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCACAACATGTTTTCTCATGTTGGGGGGAATGGCACCGAACTGACAACCAATGCTGGGCAAAACTCTCCTAAGCAGCTATCTCATGTTTTCCCAGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTTCCAATGAACGTATGAGAAACCTTTATCACCGTAAAAATGAAGCAAGCACCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCCTATGCCCGAATTCAAGGAAAAGGTTCTCTTATTGCTCATTTCCAGAACTCAAGCCTGATGAATGAAGACAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCCGGAAAATCTCGCACTGCTGGCAACGAGGAGAATCGAAGCCAAGGGAGCCCTTCAACTTTGTCAAGTGGAGAAGAGTCTGCTAATGGGATAGACTCTTCAAAAATCTCTAACTGA 2853 0.3968 MPFQIMDQRGVSASSHYFDDISFRSERNVGLRKPKSINDHYPQGNNGMVASPGNILNATPPLDVNAKAGLLLPQASLPGDNIHSTESSNYRTKSLSNACLQSAPTSYGLIGNKIVTNAAPFESSLFSSSMSEIFSQKLRFFGNDVRSDHPITAGSPPKEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRMSALDGDFGFFGSSKGKLPLVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTASKHRGFVMISYQDLRAAQNAMQALQNRPLGSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLNDELKQIFGFYGEIKEIYEYSEMNNHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMHQSQKGQEERDLGQSIIDNLSLRQKATLPSGVIGSGCLENGYNQRFQSTVRQPLNAFMDNAFIHVNSGIHNTVRGAPAGKVSSVCESSNFVDAMKFASGSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHQGLYHMWNSSNLQQQPSSSTMLWQKSPSFVNDASSPGLPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGNGTELTTNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRKNEASTNNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKGSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTAGNEENRSQGSPSTLSSGEESANGIDSSKISN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00071 950 SMART rrm1_1 255 323 IPR000504 GO:0003723
Gma08g00071 950 SMART rrm1_1 780 856 IPR000504 GO:0003723
Gma08g00071 950 SMART rrm1_1 340 408 IPR000504 GO:0003723
Gma08g00071 950 MobiDBLite consensus disorder prediction 889 950 - -
Gma08g00071 950 MobiDBLite consensus disorder prediction 920 950 - -
Gma08g00071 950 CDD RRM1_MEI2_like 253 328 IPR034453 -
Gma08g00071 950 SUPERFAMILY RNA-binding domain, RBD 780 864 IPR035979 GO:0003676
Gma08g00071 950 Gene3D - 337 433 IPR012677 -
Gma08g00071 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Gma08g00071 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Gma08g00071 950 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 944 - -
Gma08g00071 950 CDD RRM3_MEI2_like 781 866 IPR034454 -
Gma08g00071 950 MobiDBLite consensus disorder prediction 614 633 - -
Gma08g00071 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Gma08g00071 950 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 944 - -
Gma08g00071 950 SUPERFAMILY RNA-binding domain, RBD 251 410 IPR035979 GO:0003676
Gma08g00071 950 Pfam RNA recognition motif 2 778 874 IPR007201 -
Gma08g00071 950 Gene3D - 247 336 IPR012677 -
Gma08g00071 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00071 Gma-Chr8 597131 604940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00071 251 405 Eukaryotic Initiation Factors Gene Family AT3G16380 25.568 5.58e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00071 - - gmx:100797893 1880.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01459 06 13928166 13934968 Gma08g00071 08 597131 604940 ECH
Gma08g00071 08 597131 604940 Gma08g00071 08 597131 604940 ECH
Gma08g00071 08 597131 604940 Gma04g01945 04 49899752 49906536 PCT
Gma08g00071 08 597131 604940 Gma06g01459 06 13928166 13934968 PCT
Gma04g01945 04 49899752 49906536 Gma08g00071 08 597131 604940 PCT
Gma06g01459 06 13928166 13934968 Gma08g00071 08 597131 604940 PCT