Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00052 ATGGCTGCGAAATCTAGTTCGAGTTCGACAACAACAAACGTGGTGACTCTGaaggcggcgtgggttctcccgcagcgcacgcagaacatccgtgaggtgtacgaggttgggcggaagctcgggcagggccaattcgggaccaccttcgagtgcacgcgccgtgcgagtggtgggaagttcgcgtgcaagtcgattccgaagcggaagctgctgtgcaaggaggactacgaggacgtgtggcgggagattcagataatgcaccacttgtcggaacacgccaacgttgtccgcatcgaagggacgtacgaggattccacggccgtgcacctggtcatggagttgtgcgagggtggagagttgtttgacaggatcgtgcagaagggacactacagcgagagacaggcggcgaggttgataaagacgattgttgaggttgttgaggcgtgtcactcgctaggggtcatgcatagggaccttaagcctgagaatttcttgtttgataccattgatgaggatgctaagcttaaggccaccgatttcggcttgtctgttttttacaagcctgGTGAATCCTTTTGTGATGTTGTCGGGAGCCCATACTATGTCGCACCAGAGGTCTTGCGCAAGCTCTATGGACCTGAATCAGATGTTTGGAGTGCAGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAATCTGAACCGGGGATCTTCCGACAGATTTTACTAGGAAAACTTGATTTTCATTCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCgccacccatggattgttgatgacaacattgcacctgataaacctcttgattctgcagttttatcacgtctgaaacaattctctgccatgaataaattgaaaaagatggcATTGCGTGTTATTGCTGAGAGGCTATCTGAAGAAGAAATTGGTGGACTGAAAGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACGTTTGATGAGTTAAAAGATGGTTTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAAAAGTGGGACAATTGATTATGGTGAATTCATTGCTGCCACTGTCCATTTAAATAAGCTGGAGAGAGAGGAAAACCTAGTGTCGGCCTTCTCCTATTTTGACAAAGATGGCAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGATGATATCCATATTGACGACATGATCAAGGAAATTGATCAAGATAACGATGGGCAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAAGGCAATGGAGGAATTGGGAGGCGAACTATGAGAAAAACACTAAATTTAAGAGATGCTCTTGGATTAGTAGACAATGGGTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1527 0.2449 MAAKSSSSSTTTNVVTLKAAWVLPQRTQNIREVYEVGRKLGQGQFGTTFECTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGTYEDSTAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTIDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAESEPGIFRQILLGKLDFHSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00052 508 Gene3D - 333 404 - -
Gma08g00052 508 SUPERFAMILY Protein kinase-like (PK-like) 12 315 IPR011009 -
Gma08g00052 508 Pfam Protein kinase domain 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00052 508 Gene3D Phosphorylase Kinase; domain 1 36 120 - -
Gma08g00052 508 SMART serkin_6 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00052 508 ProSiteProfiles EF-hand calcium-binding domain profile. 335 370 IPR002048 GO:0005509
Gma08g00052 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 484 - -
Gma08g00052 508 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Gma08g00052 508 ProSiteProfiles Protein kinase domain profile. 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00052 508 CDD STKc_CAMK 33 291 - -
Gma08g00052 508 ProSitePatterns EF-hand calcium-binding domain. 348 360 IPR018247 -
Gma08g00052 508 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Gma08g00052 508 Gene3D Transferase(Phosphotransferase) domain 1 121 332 - -
Gma08g00052 508 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Gma08g00052 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Gma08g00052 508 CDD EFh 340 399 IPR002048 GO:0005509
Gma08g00052 508 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Gma08g00052 508 SMART efh_1 339 367 IPR002048 GO:0005509
Gma08g00052 508 SMART efh_1 375 403 IPR002048 GO:0005509
Gma08g00052 508 SMART efh_1 411 439 IPR002048 GO:0005509
Gma08g00052 508 SMART efh_1 445 473 IPR002048 GO:0005509
Gma08g00052 508 Gene3D - 405 508 - -
Gma08g00052 508 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Gma08g00052 508 ProSiteProfiles EF-hand calcium-binding domain profile. 445 476 IPR002048 GO:0005509
Gma08g00052 508 PANTHER BNAA09G05220D PROTEIN 19 484 - -
Gma08g00052 508 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Gma08g00052 508 SUPERFAMILY EF-hand 331 472 IPR011992 -
Gma08g00052 508 Pfam EF-hand domain pair 410 471 IPR002048 GO:0005509
Gma08g00052 508 Pfam EF-hand domain pair 340 400 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00052 Gma-Chr8 458181 462206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00052 22 500 EF-hand Containing Proteins AT4G09570 77.593 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma08g00052 Pkinase 3.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00052 K13412 - gmx:547825 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01947 05 40859618 40865250 Gma08g00052 08 458181 462206 GST